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author | Ricardo Wurmus <rekado@elephly.net> | 2021-12-13 10:54:05 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2021-12-13 10:54:05 +0100 |
commit | 495646aa73522e0a204504967d5b638e9cc81756 (patch) | |
tree | b4da4d9b1799b26a72ee61e820bce9137ee94976 | |
parent | 531a69ecb6ac85d03230d242b739c9671c984d0a (diff) | |
download | guix-495646aa73522e0a204504967d5b638e9cc81756.tar.gz guix-495646aa73522e0a204504967d5b638e9cc81756.zip |
gnu: Add r-drimseq.
* gnu/packages/bioconductor.scm (r-drimseq): New variable.
-rw-r--r-- | gnu/packages/bioconductor.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ee3ce80f9c..5a67f6dbbd 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1668,6 +1668,41 @@ spent loading the full derfinder package when running the F-statistics calculation in parallel.") (license license:artistic2.0))) +(define-public r-drimseq + (package + (name "r-drimseq") + (version "1.22.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "DRIMSeq" version)) + (sha256 + (base32 "0y2jb0hb633id038zmwnfny6h4ai77fdyy02f77vha1z8xg5nl02")))) + (properties `((upstream-name . "DRIMSeq"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-edger" ,r-edger) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-iranges" ,r-iranges) + ("r-limma" ,r-limma) + ("r-mass" ,r-mass) + ("r-reshape2" ,r-reshape2) + ("r-s4vectors" ,r-s4vectors))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/DRIMSeq") + (synopsis "Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq") + (description + "The package provides two frameworks. One for the differential +transcript usage analysis between different conditions and one for the tuQTL +analysis. Both are based on modeling the counts of genomic features (i.e., +transcripts) with the Dirichlet-multinomial distribution. The package also +makes available functions for visualization and exploration of the data and +results.") + (license license:gpl3+))) + (define-public r-bluster (package (name "r-bluster") |