aboutsummaryrefslogtreecommitdiff
AgeCommit message (Collapse)Author
2019-05-06gnu: r-rsamtools: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.0. [propagated-inputs]: Add r-rhtslib.
2019-05-06gnu: r-impute: Update to 1.58.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.58.0. [inputs]: Move gfortran from here... [native-inputs]: ...to here.
2019-05-06gnu: r-rcas: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.0. [propagated-inputs]: Add ghc-pandoc.
2019-05-06gnu: r-methylkit: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.10.0. [propagated-inputs]: Add r-mgcv.
2019-05-06gnu: r-annotationhub: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.0. [propagated-inputs]: Add r-biocfilecache, r-dplyr, and r-rappdirs.
2019-05-06gnu: r-fastseg: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.30.0.
2019-05-06gnu: r-keggrest: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.0.
2019-05-06gnu: r-gage: Update to 2.34.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.34.0.
2019-05-06gnu: r-genomicfiles: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.20.0.
2019-05-06gnu: r-complexheatmap: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.0.0. [propagated-inputs]: Add r-clue and r-png.
2019-05-06gnu: r-dirichletmultinomial: Update to 1.26.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.26.0.
2019-05-06gnu: r-ensembldb: Update to 2.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.0.
2019-05-06gnu: r-organismdbi: Update to 1.26.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.26.0.
2019-05-06gnu: r-biovizbase: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.32.0.
2019-05-06gnu: r-ggbio: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.32.0.
2019-05-06gnu: r-gqtlbase: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.16.0.
2019-05-06gnu: r-snpstats: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.34.0.
2019-05-06gnu: r-erma: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.0.0.
2019-05-06gnu: r-ldblock: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.0.
2019-05-06gnu: r-gqtlstats: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.16.0.
2019-05-06gnu: r-gviz: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.28.0.
2019-05-06gnu: r-gwascat: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.0. [propagated-inputs]: Remove r-annotationhub, r-ggbio, r-ggplot2, r-gqtlstats, r-graph, r-gviz, r-snpstats, r-summarizedexperiment, and r-variantannotation.
2019-05-06gnu: r-sushi: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.22.0.
2019-05-06gnu: r-fithic: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.10.0.
2019-05-06gnu: r-hitc: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.28.0.
2019-05-06gnu: r-hdf5array: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.0. [inputs]: Add zlib. [propagated-inputs]: Add r-rhdf5lib.
2019-05-06gnu: r-rhdf5lib: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.0.
2019-05-06gnu: r-beachmat: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.0.0. [inputs]: Remove hdf5 and zlib. [propagated-inputs]: Rmeove r-hdf5array, r-rcpp, r-rhdf5, and r-rhdf5lib.
2019-05-06gnu: r-singlecellexperiment: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.6.0.
2019-05-06gnu: r-scater: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.0. [propagated-inputs]: Add r-biocneighbors and r-biocsingular; remove r-plyr, r-reshape2, and r-rhdf5lib.
2019-05-06gnu: r-scran: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.0. [propagated-inputs]: Add r-bh, r-biocsingular, and r-dqrng; remove r-rhdf5lib.
2019-05-06gnu: r-delayedmatrixstats: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.0.
2019-05-06gnu: Add r-biocfilecache.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocfilecache): New variable.
2019-05-06gnu: r-interactivedisplaybase: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): Update to 1.22.0.
2019-05-06gnu: r-edaseq: Update to 2.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.18.0.
2019-05-06gnu: r-deseq: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.36.0.
2019-05-06gnu: r-aroma-light: Update to 3.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-aroma-light): Update to 3.14.0.
2019-05-06gnu: r-msnid: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.0.
2019-05-06gnu: r-msnbase: Update to 2.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.10.0.
2019-05-06gnu: r-pcamethods: Update to 1.76.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.76.0.
2019-05-06gnu: r-mzid: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.22.0.
2019-05-06gnu: r-vsn: Update to 3.52.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.52.0.
2019-05-06gnu: r-affy: Update to 1.62.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.62.0.
2019-05-06gnu: r-affyio: Update to 1.54.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.54.0.
2019-05-06gnu: r-mzr: Update to 2.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.18.0.
2019-05-06gnu: r-protgenerics: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.16.0.
2019-05-06gnu: r-sva: Update to 3.32.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.0.
2019-05-06gnu: r-copywriter: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.16.0.
2019-05-06gnu: r-chipseq: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.34.0.
2019-05-06gnu: r-annotationfilter: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.8.0.
generated by cgit