| Age | Commit message (Expand) | Author |
|---|
| 2023-05-12 | gnu: samblaster: Simplify....* gnu/packages/bioinformatics.scm (samblaster): Fix indentation.
[arguments]: Use G-expression; drop trailing #T from 'install phase.
[description]: Use double spacing between all sentences.
| Ricardo Wurmus |
| 2023-05-12 | gnu: methyldackel: Update to 0.6.1....* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.6.1.
[arguments]: Set LIBBIGWIG variable instead of patching Makefile.
[inputs]: Replace htslib-1.9 with htslib.
| Ricardo Wurmus |
| 2023-05-12 | gnu: methyldackel: Simplify arguments....* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Use list, drop
argument list.
[native-inputs]: Drop package label.
| Ricardo Wurmus |
| 2023-05-12 | gnu: phast: Simplify by using G-expression....* gnu/packages/bioinformatics.scm (phast)[arguments]: Use G-expression and
drop trailing #T from build phases.
| Ricardo Wurmus |
| 2023-05-12 | gnu: ribotaper: Simplify with G-expression....* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Use G-expression and
drop trailing #T from build phase.
| Ricardo Wurmus |
| 2023-05-12 | gnu: sra-tools: Do link with libxml2....* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use G-expression for
clarity; drop trailing #T from build phases; modify 'configure phase to
dynamically link with libxml2.
[inputs]: Drop package labels; add libxml2.
| Ricardo Wurmus |
| 2023-05-12 | gnu: ncbi-vdb: Ensure that vdb-sqlite is installed....The most important change here is the addition of the 'install-libs phase.
All other changes are just the result of switching to G-expressions.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add 'install-libs
phase; use G-expression; drop trailing #T from build phases.
[inputs]: Drop package labels.
| Ricardo Wurmus |
| 2023-05-12 | gnu: Add python-mgatk....* gnu/packages/bioinformatics.scm (python-mgatk): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2023-05-12 | system: default-skeletons: Merge search-paths of multiple profiles....Fixes <https://issues.guix.gnu.org/20255>.
* gnu/system/shadow.scm (default-skeletons)[bash_profile, zprofile]:
Merge search-paths from multiple profiles via "guix package".
| 宋文武 |
| 2023-05-12 | gnu: Add Free as in Freedom (2.0)....* gnu/packages/fsf.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
| 宋文武 |
| 2023-05-12 | gnu: sbcl-serapeum: Update to 20230511....* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230511.
| Pierre Neidhardt |
| 2023-05-12 | gnu: python-lightning-cloud: Use older version of fastapi....The variant of the fastapi package must match that of
python-pytorch-lightning.
* gnu/packages/machine-learning.scm (python-lightning-cloud)
[propagated-inputs]: Replace python-fastapi with
python-fastapi-for-pytorch-lightning.
| Ricardo Wurmus |
| 2023-05-12 | gnu: Add python-optparse-pretty....* gnu/packages/python-xyz.scm (python-optparse-pretty): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add r-dropletutils....* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add r-ggpattern....* gnu/packages/cran.scm (r-ggpattern): New variable.
| Mădălin Ionel Patrașcu |
| 2023-05-12 | gnu: Add r-gridpattern....* gnu/packages/cran.scm (r-gridpattern): New variable.
| Mădălin Ionel Patrașcu |
| 2023-05-11 | gnu: texlive-datetime2: Add needed propagated-inputs....Required packages can be seen with:
$ rg RequirePackage $(guix build texlive-datetime2)
* gnu/packages/tex.scm (texlive-datetime2)[propagated-inputs]: Add
TEXLIVE-ETOOLBOX, TEXLIVE-LATEX-XKEYVAL, and TEXLIVE-TRACKLANG.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Greg Hogan |
| 2023-05-11 | gnu: Add emacs-framemove....* gnu/packages/emacs-xyz.scm (emacs-framemove): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Fabio Natali |
| 2023-05-11 | gnu: texlive-ddphonism: Replace deprecated input....* gnu/packages/tex.scm (texlive-ddphonism)[propagated-inputs]: Replace
deprecated texlive-latex-tools by texlive-tools.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-totpages: Replace deprecated input....* gnu/packages/tex.scm (texlive-totpages)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-totcount: Replace deprecated input....* gnu/packages/tex.scm (texlive-totcount)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-ncctools: Replace deprecated input....* gnu/packages/tex.scm (texlive-ncctools)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-soulutf8: Replace deprecated inputs....* gnu/packages/tex.scm (texlive-soulutf8)[propagated-inputs]: Replace
deprecated texlive-generic-etexcmds by texlive-etexcmds and deprecated
texlive-generic-infwarerr by texlive-infwarerr.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: texlive-xetex: Replace deprecated inputs....* gnu/packages/tex.scm (texlive-xetex)[propagated-inputs]: Replace deprecated
texlive-generic-atbegshi by texlive-atbegshi and deprecated
texlive-latex-atveryend by texlive-atveryend.
Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
| Simon Tournier |
| 2023-05-11 | gnu: python-skranger: Install library....* gnu/packages/python-xyz.scm (python-skranger)[arguments]: Install the
library that we've just built.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-skranger....* gnu/packages/python-xyz.scm (python-skranger): New variable.
| Ricardo Wurmus |
| 2023-05-11 | Revert "gnu: Add python-pytest-enabler."...This reverts commit 0a8c46e89f095a9ec3632d43920ac3cce49f16d5.
An older version of python-pytest-enabler already exists in (gnu packages
check).
| Ricardo Wurmus |
| 2023-05-11 | gnu: lagrange: Update to 1.15.9....* gnu/packages/web-browsers.scm (lagrange): Update to 1.15.9.
| Efraim Flashner |
| 2023-05-11 | gnu: mutt: Update to 2.2.10....* gnu/packages/mail.scm (mutt): Update to 2.2.10.
| Efraim Flashner |
| 2023-05-11 | gnu: qiv: Update to 2.3.3....* gnu/packages/image-viewers.scm (qiv): Update to 2.3.3.
| Efraim Flashner |
| 2023-05-11 | gnu: git-annex: Update to 10.20230407....* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20230407.
| Efraim Flashner |
| 2023-05-11 | gnu: global: Update to 6.6.10....* gnu/packages/code.scm (global): Update to 6.6.10.
| Efraim Flashner |
| 2023-05-11 | tests: vnstat: Avoid call to 'getservbyname'....This would break "make as-derivation" because /etc/services is
unavailable in the build environment:
[ 38/ 80] loading... 95.0% of 40 filesBacktrace:
In guix/build/compile.scm:
249:8 19 (compile-files "." "/gnu/store/s5nadqd6hkzivkxp33svwqslfn608ng5-guix-system-tests" ("gnu/tests/audio.scm" "gnu/tests/base.scm" "gnu/tests/ci.scm" "gnu/tests/cups.scm" "gnu/tests/d…" …) …)
[…]
In unknown file:
0 (getserv "discard" "tcp")
ERROR: In procedure getserv:
In procedure getserv: no such service discard
builder for `/gnu/store/…-guix-system-tests.drv' failed with exit code 1
* gnu/tests/vnstat.scm (run-vnstat-test): Hard-code 'guest-port' instead
of calling 'getservbyname'.
| Ludovic Courtès |
| 2023-05-11 | .guix-authorizations: Authorize Josselin Poiret....* .guix-authorizations (jpoiret): Add OpenPGP key fingerprint.
| Maxim Cournoyer |
| 2023-05-11 | gnu: Add python-omnipath....* gnu/packages/python-web.scm (python-omnipath): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-inflect....* gnu/packages/python-xyz.scm (python-inflect): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-docrep....* gnu/packages/python-xyz.scm (python-docrep): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-pytest-enabler....* gnu/packages/python-check.scm (python-pytest-enabler): New variable.
| Ricardo Wurmus |
| 2023-05-11 | gnu: Add python-adjusttext....* gnu/packages/python-xyz.scm (python-adjusttext): New variable.
| Ricardo Wurmus |
| 2023-05-11 | tests: Add vnstat tests....* gnu/tests/vnstat.scm: New file.
* gnu/local.mk: Register it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Bruno Victal |
| 2023-05-11 | services: inetd: Export accessors....* gnu/services/networking.scm: Export inetd-configuration?,
inetd-configuration-program, inetd-configuration-entries, inetd-entry?,
inetd-entry-node, inetd-entry-name, inetd-entry-socket-type,
inetd-entry-protocol, inetd-entry-wait?, inetd-entry-user, inetd-entry-program
and inetd-entry-arguments.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Bruno Victal |
| 2023-05-11 | services: Add vnstat-service-type....* gnu/services/monitoring.scm (vnstat-service-type): New variable.
* doc/guix.texi (Monitoring Services): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Bruno Victal |
| 2023-05-11 | doc: Update dicod-configuration example...* doc/guix.texi (Dictionary Service): Update dicod-configuration example to
fix outdated WordNet database configuration.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Nathaniel Nicandro |
| 2023-05-11 | gnu: barrier: Include NULL compatibility....Fixes <https://bugs.gnu.org/63244>.
Reported by <john@fremlin.org>
* gnu/packages/barrier.scm (barrier)[arguments]: Use G-exp, add phases
including NULL macro.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Simon Tournier |
| 2023-05-11 | gnu: git: Update to 2.40.1 [security fixes]....Fixes CVE-2023-25652 and CVE-2023-29007.
* gnu/packages/version-control.scm (git): Update to 2.40.1.
(git-minimal)[arguments]: Rewrite to use gexps. In
'remove-unusable-perl-commands' phase, make "git-add--interactive"
removal conditional.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2023-05-11 | gnu: laby: Add patch for being able to execute game code....Reported upstream at https://github.com/sgimenez/laby/pull/68
* gnu/packages/patches/laby-use-tmpdir-from-runtime.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/games.scm (laby)[source]: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ivana Drazovic |
| 2023-05-11 | gnu: laby: Make laby function in pure environments....* gnu/packages/games.scm (laby)
[build-system]: Switch to 'glib-or-gtk-build-system'.
[inputs]: Add 'gdk-pixbuf' and 'librsvg-for-system'.
[arguments]: Wrap to use SVG-enabled pixbuf loaders.cache.
Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ivana Drazovic |
| 2023-05-11 | gnu: laby: Use new package style....* gnu/packages/games.scm (laby)[arguments]: Use gexps.
Use "this-package-input" to locate package input.
Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ivana Drazovic |
| 2023-05-11 | doc: Clarify substitute* docstring with an example....* doc/guix.texi (Build Utilities): Update the corresponding passage.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| Gabriel Wicki |
| 2023-05-11 | services: dhcp-client-configuration: Add 'shepherd-requirement' field....* gnu/services/networking.scm (<dhcp-client-configuration>)
[shepherd-requirement]: New field.
(dhcp-client-shepherd-service): Honor it.
(dhcp-client-configuration-shepherd-requirement): Export accessor.
* doc/guix.texi (Networking Setup): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Sergey Trofimov |
