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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-05-12 22:29:38 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-05-12 22:29:38 +0200 |
| commit | 6331e41cde07e26a25e45dcfd55f60e654de678b (patch) | |
| tree | 9f846350db3de72a7d774bcef1074b32db462803 | |
| parent | 7da3ca1bd70a9013c436a7e97eabe21d06d081fa (diff) | |
| download | guix-6331e41cde07e26a25e45dcfd55f60e654de678b.tar.gz guix-6331e41cde07e26a25e45dcfd55f60e654de678b.zip | |
gnu: samblaster: Simplify.
* gnu/packages/bioinformatics.scm (samblaster): Fix indentation.
[arguments]: Use G-expression; drop trailing #T from 'install phase.
[description]: Use double spacing between all sentences.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 17 insertions, 18 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 68ba0b15fa..2eb1645691 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17768,31 +17768,30 @@ length of a short-read sequencing alignment.") (name "samblaster") (version "0.1.24") (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/GregoryFaust/samblaster") - (commit (string-append "v." version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7")))) + (method git-fetch) + (uri (git-reference + (url "https://github.com/GregoryFaust/samblaster") + (commit (string-append "v." version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; there are none - #:phases - (modify-phases %standard-phases - (delete 'configure) ; There is no configure phase. - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (install-file "samblaster" - (string-append (assoc-ref outputs "out") "/bin")) - #t))))) + (list + #:tests? #f ; there are none + #:phases + #~(modify-phases %standard-phases + (delete 'configure) ;There is no configure phase. + (replace 'install + (lambda _ + (install-file "samblaster" (string-append #$output "/bin"))))))) (home-page "https://github.com/GregoryFaust/samblaster") (synopsis "Mark duplicates in paired-end SAM files") (description "Samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, -and/or unmapped/clipped reads to a separate FASTQ file. When marking +and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.") (license license:expat))) |