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2024-12-03gnu: r-megadepth: Add missing inputs and disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-megadepth)[propagated-inputs]: Add megadepth. [arguments]: Disable tests. [inputs]: Remove empty field. [properties]: Tell updater to keep megadepth as a propagated input. Change-Id: Idbbc371c2d66aa7c0d7e2add13fa35a5b4f9cd77
2024-12-03gnu: r-alpine: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alpine)[native-inputs]: Add r-testthat. Change-Id: I0dece0c9def13b5aed392b0a8404ee96e3d57ab5
2024-12-03gnu: r-tgutil: Add missing inputs.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tgutil)[native-inputs]: Add r-testthat. Change-Id: Idb64f13cfcd01db56362fb77c4aca41095e4cf0a
2024-12-03gnu: r-biocdockermanager: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocdockermanager)[native-inputs]: Add r-testthat. Change-Id: I22918f6024bcd2e31f7707ee2dcd2a98061a6136
2024-12-03gnu: r-motifdb: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifdb)[native-inputs]: Add r-seqlogo. Change-Id: I4a2316e35ba4b2c79f01edb1d887702102b1106c
2024-12-03gnu: r-dittoseq: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dittoseq)[native-inputs]: Add r-complexheatmap, r-deseq2, r-edger r-ggplot-multistats, r-ggrastr, and r-plotly.
2024-12-03gnu: r-vipor: Disable vignettes.Ricardo Wurmus
* gnu/packages/statistics.scm (r-vipor)[arguments]: Disable vignettes. Change-Id: I58c8e4b7b7eb6d6f1693f34199721fd0bcbf6c82
2024-12-03gnu: r-presto: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-presto)[native-inputs]: Add r-testthat. Change-Id: I3fe5ec83478e384fe34701b0672b6f216255b1d6
2024-12-03gnu: r-complexheatmap: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-complexheatmap)[native-inputs]: Add r-dendextend, r-genomicranges, and r-gridtext. Change-Id: If306ccd62519e8af3314b6aadcac3a34f08d9138
2024-12-03gnu: r-fishpond: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fishpond)[native-inputs]: Add r-data-table, r-deseq2, and r-samr. Change-Id: I5e3c827f274a20ff410287f39b3a57de66b77f01
2024-12-03gnu: r-psiplot: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-psiplot)[native-inputs]: Add r-testthat. Change-Id: I19ad7216f86968c87abad64313bf09d03e3ad612
2024-12-03gnu: r-geoquery: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-geoquery)[arguments]: Disable tests. Change-Id: Ibd30534cfb1f6bd4927f16908a749dd1881932e4
2024-12-03gnu: r-productplots: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-productplots)[native-inputs]: Add r-reshape2. Change-Id: Id1604a4859b2fef076dd1485b25ae185175173e0
2024-12-03gnu: r-annotationforge: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationforge)[native-inputs]: Add r-go-db. Change-Id: Ie1b824fd4215e6583fd561b5d959dec52ce19eaa
2024-12-03gnu: r-greylistchip: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-greylistchip)[native-inputs]: Add r-biocstyle. Change-Id: I65ce2be5b87171bf752da4181dbf8eea1f2d50c3
2024-12-03gnu: r-omnipathr/devel: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-omnipathr/devel)[native-inputs]: Add r-testthat. Change-Id: I7e339871d65ed0ff263db14ff9fb0aa1bb3ed0bb
2024-12-03gnu: r-pcatools: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pcatools)[native-inputs]: Add r-scran. Change-Id: Ie815aa731b3ef52560315bd040eca42f69f3f890
2024-12-03gnu: r-sva: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sva)[native-inputs]: Add r-biocstyle, r-bladderbatch, r-pamr, and r-zebrafishrnaseq. Change-Id: Ie97432eec92258c680814a45ff842c17674c3ecc
2024-12-03gnu: Add r-zebrafishrnaseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zebrafishrnaseq): New variable. Change-Id: I5fe044acef56aba8601fea9cc766bbf69594714b
2024-12-03gnu: r-mlinterfaces: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces)[native-inputs]: Add r-golubesets. Change-Id: I509c44b49974c423ce138db74dc0275de5a6570d
2024-12-03gnu: Add r-oligodata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligodata): New variable. Change-Id: I605b877f91c068180c55da5ecbbd62b6071fde3c
2024-12-03gnu: Add r-pd-mapping50k-hind240.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pd-mapping50k-hind240): New variable. Change-Id: I11680ac9b36494565f22f83cc4cae49f8d751b13
2024-12-03gnu: r-oligo: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligo)[arguments]: Disable tests. Change-Id: Ief8655fed61142efa86cdf0170e417fde2f4c617
2024-12-03gnu: r-oligoclasses: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligoclasses)[arguments]: Disable tests. Change-Id: I0f8513449464a7fce0a353bcaf62b67bc58f31fe
2024-12-03gnu: r-oligoclasses: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligoclasses)[native-inputs]: Add r-genomewidesnp6crlmm and r-human370v1ccrlmm. Change-Id: I597e4fe28ec054376a8a4bbf2f87492d1a7bdce1
2024-12-03gnu: Add r-human370v1ccrlmm.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-human370v1ccrlmm): New variable. Change-Id: I46b8f5aa896fb1357cfe0329bbd6e25d7fd9db9c
2024-12-03gnu: Add r-genomewidesnp6crlmm.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomewidesnp6crlmm): New variable. Change-Id: I6291cc56961076ecff1fba835e936036e7fdf35b
2024-12-03gnu: r-linnorm: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-linnorm)[native-inputs]: Add r-matrixstats and r-moments. Change-Id: I5b1273c24d865bf90b481f426a3cc70032bdfc47
2024-12-03gnu: r-varianttools: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-varianttools)[native-inputs]: Add r-lungcancerlines. Change-Id: I0d9d226a15d56d5ff9873ccc3b2f1b7cad31d8af
2024-12-03gnu: Add r-lungcancerlines.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lungcancerlines): New variable. Change-Id: I4f688432cf3ec4361cd870ef12abef8678a5f665
2024-12-03gnu: r-millefy: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-millefy)[native-inputs]: Add r-testthat. Change-Id: Id5d1f74074f05f1af2e3726e9a9e49f2d63f13c9
2024-12-03gnu: r-structuralvariantannotation: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-structuralvariantannotation) [native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19 and r-tidyverse. Change-Id: I2f91947e09b046f314faefc86bd2bbfdd7bf14de
2024-12-03gnu: r-annmap: Fix tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annmap)[arguments]: Add phase 'set-HOME. Change-Id: I0962b8da16f121bca7b5f1b619386447875dd108
2024-12-03gnu: r-chipcomp: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipcomp)[native-inputs]: Add r-biocstyle. Change-Id: I7aeab9d0169480602286bce5f1374b70d2c50e75
2024-12-03gnu: r-mutationalpatterns: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mutationalpatterns)[native-inputs]: Add r-ccfindr. Change-Id: I294c6c4d361c70c55e58509b2ff6512c24dd3978
2024-12-03gnu: r-zonator: Add test inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-zonator)[native-inputs]: Add r-testthat. Change-Id: I9cf262f2176b770d229fb0c7d9df217e9ab8a45c
2024-12-03gnu: Add r-ccfindr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ccfindr): New variable. Change-Id: Icc76252494a1750888b8218df36ed002096c0268
2024-12-03gnu: Add r-fmesher.Ricardo Wurmus
* gnu/packages/cran.scm (r-fmesher): New variable. Change-Id: Ic9abf1b6ca383dba429366324b40877d4f51245a
2024-12-03gnu: r-abn: Add test inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abn)[arguments]: Add phase 'delete-bad-tests. [native-inputs]: Add r-entropy, r-moments, and r-rhpcblasctl. Change-Id: Id981a537882ecc620232049e6831de657ec7f29a
2024-12-03gnu: r-singlet: Add test inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-singlet)[native-inputs]: Add r-testthat. Change-Id: I617f6bbb9e11ef00148571b94a4aaf2d445cfcb2
2024-12-03gnu: r-rapportools: Disable tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-rapportools)[arguments]: Disable tests. Change-Id: Ied42ce54bea57a36f4885b5e0093fe9d3b8da03e
2024-12-03gnu: r-zoon: Disable tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-zoon)[arguments]: Disable tests. Change-Id: I9d8c02c66fd95f1111914b02588f7841c2d46f39
2024-12-03gnu: r-kegggraph: Add test inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-kegggraph)[arguments]: Disable vignettes. [native-inputs]: Add r-hgu133plus2-db and r-rbgl. Change-Id: I7958c35cb0e507b209578c0a5d0a093fc9759e0c
2024-12-03gnu: r-assertive-reflection: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-reflection)[native-inputs]: Add r-testthat. Change-Id: Id9a1bb673fe1644336639d4365d2f55b7478e02e
2024-12-03gnu: r-assertive-models: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-models)[native-inputs]: Add r-testthat. Change-Id: Idaadd19423d2a42ee8c3765ea0d5643dba430565
2024-12-03gnu: r-assertive-matrices: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-matrices)[native-inputs]: Add r-testthat. Change-Id: Ia91eee2a7c8597b32833f3245b31398c4c03b0d8
2024-12-03gnu: r-assertive-sets: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-sets)[native-inputs]: Add r-testthat. Change-Id: I701a52e5cc9508b84f57452c81fb00c635331a3e
2024-12-03gnu: r-assertive-numbers: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-numbers)[native-inputs]: Add r-testthat. Change-Id: Ib76e20c5955e8e8da5bbad0740311032a28032f4
2024-12-03gnu: r-assertive-properties: Add test inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-properties)[native-inputs]: Add r-testthat. [arguments]: Add phase 'delete-bad-tests. Change-Id: Idb11a7bfb85dc6f5a4e365149488dd1996e7d8a5
2024-12-03gnu: r-snprelate: Add test inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-snprelate)[native-inputs]: Add r-biocgenerics and r-matrix. Change-Id: Ie0f58fc3a94622a316213bc6f50d2f1e30199f1a
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