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span title='2019-11-19 11:32:48 +0100'>2019-11-19gnu: hwloc: Adjust references to 'hwloc'....This is a followup to 8ec7ca22d363b80b173ce87c5f39d5ca9686d248, which led to a stack overflow (cyclic graph) when attempting to build HWLOC-2. * gnu/packages/mpi.scm (hwloc-2): Refer to HWLOC-1 instead of HWLOC. Ludovic Courtès 2019-11-19gnu: hwloc: Default to 2.x....* gnu/packages/mpi.scm (hwloc): Rename to... (hwloc-1): ... this. (hwloc-2): Adjust 'inherit' clause accordingly. (hwloc): New variable. Ludovic Courtès 2019-11-16gnu: openmpi: Silence UCX warnings when running tests....* gnu/packages/mpi.scm (%openmpi-setup): Set "UCX_LOG_LEVEL". Ludovic Courtès 2019-11-15Revert "gnu: openmpi: Pass explicit "--with-*" configure flags."...This reverts commit eaa52b5baa8fbb26a79890561d0c40344d1e1bf3, which would lead to build failures on systems other than x86_64-linux. Ludovic Courtès 2019-11-15gnu: openmpi: Fix typo....* gnu/packages/mpi.scm (openmpi)[inputs]: For UCX, check the supported systems of UCX, not PSM2. Ludovic Courtès 2019-11-15gnu: openmpi: Raise the priority of the PSM2 component....This allows us to get better performance by default on machines with OmniPath hardware. * gnu/packages/patches/openmpi-psm2-priority.patch: New file. * gnu/packages/mpi.scm (openmpi)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès 2019-11-15gnu: openmpi, slurm: Switch to hwloc 2.x....* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise. Ludovic Courtès 2019-11-15gnu: hwloc: Update to 2.1.0....* gnu/packages/mpi.scm (hwloc-2.0): Rename to... (hwloc-2): ... this. Update to 2.1.0 (hwloc-2.0): Define as deprecated. * gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly. Ludovic Courtès 2019-11-15gnu: Add Intel MPI Benchmarks....* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable. Ludovic Courtès 2019-11-15gnu: openmpi: Pass explicit "--with-*" configure flags....* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx", "--with-psm", and "--with-psm2". Ludovic Courtès 2019-11-08gnu: python-mpi4py: Update to 3.0.3....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.3. Tobias Geerinckx-Rice 2019-10-15gnu: openmpi: Add dependency on UCX when supported....* gnu/packages/mpi.scm (openmpi)[inputs]: Add UCX conditionally. Ludovic Courtès 2019-10-10gnu: openmpi: Update to 4.0.2....* gnu/packages/mpi.scm (openmpi): Update to 4.0.2. Ludovic Courtès 2019-07-14gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7....These variables are no longer set in the build environment by default. GCC still respects these search paths and treats them as "system headers" so we can continue to use them, just not expect them to be available. * gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH. * gnu/packages/games.scm (kiki)[arguments]: Likewise. * gnu/packages/networking.scm (hcxtools)[arguments]: Likewise. * gnu/packages/synergy.scm (synergy)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise. * gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise. Marius Bakke 2019-06-21gnu: python-mpi4py: Update to 3.0.2....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.2. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Paul Garlick 2019-04-16gnu: openmpi: Update to ....* gnu/packages/mpi.scm (openmpi): Update to . mpi openmpi Tobias Geerinckx-Rice