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-rw-r--r--gnu/packages/bioconductor.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 85ee56c539..76c1423bc9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1103,6 +1103,32 @@ examples' of Affymetrix data, unlike the artificial examples included in the
package @code{affy}.")
(license license:gpl2+)))
+(define-public r-gagedata
+ (package
+ (name "r-gagedata")
+ (version "2.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "gageData" version 'experiment))
+ (sha256
+ (base32 "16lmnvmbykvbdgwyx7r2jc217gb9nidn81860v5kri99g97j4jdn"))))
+ (properties `((upstream-name . "gageData")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/gageData")
+ (synopsis "Auxillary data for gage package")
+ (description
+ "This is a supportive data package for the software package @code{gage}.
+However, the data supplied here are also useful for gene set or pathway
+analysis or microarray data analysis in general. In this package, we provide
+two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and
+BMP6 (originally published as an demo dataset for GAGE, also registered as
+GSE13604 in GEO). This package also includes commonly used gene set data based
+on KEGG pathways and GO terms for major research species, including human,
+mouse, rat and budding yeast. Mapping data between common gene IDs for budding
+yeast are also included.")
+ (license license:gpl2+)))
+
(define-public r-coverageview
(package
(name "r-coverageview")