diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/maths.scm | 28 |
1 files changed, 27 insertions, 1 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index df21d5ea5b..fce03ac5b8 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -442,6 +442,33 @@ extremely large and complex data collections.") (license (license:x11-style "http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING")))) +(define-public hdf5-parallel-openmpi + (package (inherit hdf5) + (name "hdf5-parallel-openmpi") + (inputs + `(("mpi" ,openmpi) + ,@(package-inputs hdf5))) + (arguments + (substitute-keyword-arguments `(#:configure-flags '("--enable-parallel") + ,@(package-arguments hdf5)) + ((#:phases phases) + `(modify-phases ,phases + (add-before 'check 'patch-tests + (lambda _ + ;; OpenMPI's mpirun will exit with non-zero status if it + ;; detects an "abnormal termination", i.e. any process not + ;; calling MPI_Finalize(). Since the test is explicitely + ;; avoiding MPI_Finalize so as not to have at_exit and thus + ;; H5C_flush_cache from being called, mpirun will always + ;; complain, so turn this test off. + (substitute* "testpar/Makefile" + (("(^TEST_PROG_PARA.*)t_pflush1(.*)" front back) + (string-append front back "\n"))) + (substitute* "tools/h5diff/testph5diff.sh" + (("/bin/sh") (which "sh"))) + #t)))))) + (synopsis "Management suite for data with parallel IO support"))) + (define-public nlopt (package (name "nlopt") @@ -480,7 +507,6 @@ common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.") (license license:lgpl2.1+))) - ;; For a fully featured Octave, users are strongly recommended also to install ;; the following packages: texinfo, less, ghostscript, gnuplot. (define-public octave |