diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6a249bcd50..754ba98afc 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10291,6 +10291,49 @@ a scRNA-seq experiment onto the cell-types or individual cells identified in a different experiment.") (license license:gpl3))) +(define-public r-screpertoire + (package + (name "r-screpertoire") + (version "1.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "scRepertoire" version)) + (sha256 + (base32 "1wgs8dv5zl82iciy86w5ws1gq8v2piklcifbw7gmbw60kijyr2l1")))) + (properties `((upstream-name . "scRepertoire"))) + (build-system r-build-system) + (propagated-inputs + (list r-doparallel + r-dplyr + r-ggalluvial + r-ggplot2 + r-ggraph + r-igraph + r-plyr + r-powertcr + r-reshape2 + r-rlang + r-seuratobject + r-singlecellexperiment + r-stringdist + r-stringr + r-summarizedexperiment + r-tidygraph + r-vegan)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/scRepertoire") + (synopsis "Toolkit for single-cell immune receptor profiling") + (description + "The scRepertoire package was built to process data derived from the 10x +Genomics Chromium Immune Profiling for both @acronym{TCR, T-cell receptor} and +@acronym{Ig, immunoglobulin} enrichment workflows and subsequently interacts with +the popular Seurat and SingleCellExperiment R packages. It also allows for +general analysis of single-cell clonotype information without the use of +expression information. The package functions as a wrapper for Startrac and +powerTCR R packages.") + (license license:gpl2))) + (define-public r-scry (package (name "r-scry") |