diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1cfcc4aa56..3c1c180b7c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1062,6 +1062,50 @@ simultaneously considered.") with DNA methylation micro-array data.") (license license:unlicense)))) +(define-public r-netid + (let ((commit "6ad1ffdd64a6584cc1d392524dad8e248d4590a8") + (revision "1")) + (package + (name "r-netid") + (version (git-version "0.1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/WWXkenmo/NetID_package") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1blm5ljql91xmbyxxwm3vw8iz8d4ir9gm7wfnapqhfdbjvg4l21q")))) + (properties `((upstream-name . "NetID"))) + (build-system r-build-system) + (propagated-inputs (list r-doparallel + r-dorng + r-glmnet + r-hmisc + r-igraph + r-irlba + r-lmtest + r-matrix + r-mclust + r-pracma + r-raceid + r-rarpack + r-reticulate + r-robustrankaggreg + r-rsvd + r-seurat)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/WWXkenmo/NetID_package") + (synopsis + "Scalable method to infer fate-specific networks from single-cell data") + (description + "This package provides a method to sample cells from single-cell data. +It also generates an aggregate profile on a pruned K-Nearest Neighbor graph. +This approach leads to an improved gene expression profile for quantifying +gene regulations.") + (license license:expat)))) + (define-public r-numbat (let ((commit "4ab7752e7d267a3f443756675728521a9b0a7295") (revision "1")) |