diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e46a9175fa..683ec77213 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9440,6 +9440,44 @@ profile. It scores the expression activities of gene sets at a single-sample level.") (license license:gpl3))) +(define-public r-tcgautils + (package + (name "r-tcgautils") + (version "1.20.2") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "TCGAutils" version)) + (sha256 + (base32 + "0nnfrd5x3mii9adizvz79jinlxn2lhg4civ9v0wwygmdhk7rrm1n")))) + (properties `((upstream-name . "TCGAutils"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-biocgenerics + r-genomeinfodb + r-genomicdatacommons + r-genomicfeatures + r-genomicranges + r-iranges + r-multiassayexperiment + r-raggedexperiment + r-rvest + r-s4vectors + r-stringr + r-summarizedexperiment + r-xml2)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/TCGAutils") + (synopsis "TCGA utility functions for data management") + (description + "This package provides a suite of helper functions for checking and +manipulating TCGA data including data obtained from the @code{curatedTCGAData} +experiment package. These functions aim to simplify and make working with +TCGA data more manageable. Exported functions include those that import data +from flat files into Bioconductor objects, convert row annotations, and +identifier translation via the GDC API.") + (license license:artistic2.0))) + (define-public r-tkwidgets (package (name "r-tkwidgets") |