diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 251ad1e1ac..a1fc1ac7e3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2483,3 +2483,41 @@ Linnorm can work with raw count, CPM, RPKM, FPKM and TPM. Additionally, the @code{RnaXSim} function is included for simulating RNA-seq data for the evaluation of DEG analysis methods.") (license license:expat))) + +(define-public r-ioniser + (package + (name "r-ioniser") + (version "2.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "IONiseR" version)) + (sha256 + (base32 + "01lqisdlsvym8nhgpzn7lpcddk9lv9253dy9v65r2dicb5xqhj00")))) + (properties `((upstream-name . "IONiseR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-biostrings" ,r-biostrings) + ("r-bit64" ,r-bit64) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-magrittr" ,r-magrittr) + ("r-rhdf5" ,r-rhdf5) + ("r-shortread" ,r-shortread) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr) + ("r-xvector" ,r-xvector))) + (home-page "https://bioconductor.org/packages/IONiseR/") + (synopsis "Quality assessment tools for Oxford Nanopore MinION data") + (description + "IONiseR provides tools for the quality assessment of Oxford Nanopore +MinION data. It extracts summary statistics from a set of fast5 files and can +be used either before or after base calling. In addition to standard +summaries of the read-types produced, it provides a number of plots for +visualising metrics relative to experiment run time or spatially over the +surface of a flowcell.") + (license license:expat))) |