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Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0ded2a7b67..32391d6d4b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -197,6 +197,36 @@ default." ) genomes and gene ID formats, largely based on the UCSC table browser.") (license license:lgpl2.0+))) +(define-public r-txdb-mmusculus-ucsc-mm9-knowngene + (package + (name "r-txdb-mmusculus-ucsc-mm9-knowngene") + (version "3.2.2") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://bioconductor.org/packages/" + "release/data/annotation/src/contrib" + "/TxDb.Mmusculus.UCSC.mm9.knownGene_" + version ".tar.gz")) + (sha256 + (base32 + "16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2")))) + (properties + `((upstream-name . "TxDb.Mmusculus.UCSC.mm9.knownGene"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomicfeatures" ,r-genomicfeatures) + ("r-annotationdbi" ,r-annotationdbi))) + (home-page + "https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm9.knownGene/") + (synopsis "Annotation package for mouse genome in TxDb format") + (description + "This package provides an annotation database of Mouse genome data. It +is derived from the UCSC mm9 genome and based on the \"knownGene\" track. The +database is exposed as a @code{TxDb} object.") + (license license:artistic2.0))) + (define-public r-hpar (package |