diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/python-science.scm | 66 |
1 files changed, 47 insertions, 19 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 073243b63d..e932d6f74c 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -245,33 +245,61 @@ logic, also known as grey logic.") "Scikit-image is a collection of algorithms for image processing.") (license license:bsd-3))) +(define-public python-scikit-optimize + (package + (name "python-scikit-optimize") + (version "0.9.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "scikit-optimize" version)) + (sha256 + (base32 + "0230ya8bwrzxjwcy2vz23a3hg6caggnnmg2vq1f9zz2797kckn3p")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-joblib + python-matplotlib + python-numpy + python-pyaml + python-scikit-learn + python-scipy)) + (native-inputs + (list python-pytest)) + (home-page "https://scikit-optimize.github.io/") + (synopsis "Sequential model-based optimization toolbox") + (description "Scikit-Optimize, or @code{skopt}, is a simple and efficient +library to minimize (very) expensive and noisy black-box functions. It +implements several methods for sequential model-based optimization. +@code{skopt} aims to be accessible and easy to use in many contexts.") + (license license:bsd-3))) + (define-public python-scikit-allel (package (name "python-scikit-allel") (version "1.3.5") (source - (origin - (method url-fetch) - (uri (pypi-uri "scikit-allel" version)) - (sha256 - (base32 "1vg88ng6gd175gzk39iz1drxig5l91dyx398w2kbw3w8036zv8gj")))) + (origin + (method url-fetch) + (uri (pypi-uri "scikit-allel" version)) + (sha256 + (base32 "1vg88ng6gd175gzk39iz1drxig5l91dyx398w2kbw3w8036zv8gj")))) (build-system python-build-system) (arguments (list - #:phases - #~(modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "python" "setup.py" "build_ext" "--inplace") - (invoke "python" "-m" "pytest" "-v" "allel" - ;; AttributeError: 'Dataset' object has no attribute 'asstr' - "-k" (string-append - "not test_vcf_to_hdf5" - " and not test_vcf_to_hdf5_exclude" - " and not test_vcf_to_hdf5_rename" - " and not test_vcf_to_hdf5_group" - " and not test_vcf_to_hdf5_ann")))))))) + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "setup.py" "build_ext" "--inplace") + (invoke "python" "-m" "pytest" "-v" "allel" + ;; AttributeError: 'Dataset' object has no attribute 'asstr' + "-k" (string-append + "not test_vcf_to_hdf5" + " and not test_vcf_to_hdf5_exclude" + " and not test_vcf_to_hdf5_rename" + " and not test_vcf_to_hdf5_group" + " and not test_vcf_to_hdf5_ann")))))))) (propagated-inputs (list python-dask python-numpy)) |