diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/maths.scm | 162 |
1 files changed, 83 insertions, 79 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index e3cc3c993e..8d71bf324f 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -5182,85 +5182,89 @@ revised simplex and the branch-and-bound methods.") (propagated-inputs (list openmpi)) (arguments - `(#:build-type "Release" - #:configure-flags - `("-DBUILD_SHARED_LIBS=ON" - ;; Obtain the equivalent of RelWithDebInfo but with -O3 (the Release - ;; default) rather than -O2 (the RelWithDebInfo default), to conform - ;; to candi's trilinos.package's compilation flags, which are -g -O3. - "-DCMAKE_C_FLAGS=-g" - "-DCMAKE_CXX_FLAGS=-g" - "-DCMAKE_Fortran_FLAGS=-g" - - ;; Trilinos libraries that deal.II can interface with. - "-DTrilinos_ENABLE_Amesos=ON" - "-DTrilinos_ENABLE_AztecOO=ON" - "-DTrilinos_ENABLE_Epetra=ON" - "-DTrilinos_ENABLE_EpetraExt=ON" - "-DTrilinos_ENABLE_Ifpack=ON" - "-DTrilinos_ENABLE_ML=ON" - "-DTrilinos_ENABLE_MueLu=ON" - "-DTrilinos_ENABLE_ROL=ON" - ;; Optional; required for deal.II's GridIn::read_exodusii, but - ;; depends on netcdf. - ;; Enable if and when someone needs it. - ;;"-DTrilinos_ENABLE_SEACAS=ON" - "-DTrilinos_ENABLE_Sacado=ON" - "-DTrilinos_ENABLE_Teuchos=ON" - "-DTrilinos_ENABLE_Tpetra=ON" - "-DTrilinos_ENABLE_Zoltan=ON" - - ;; Third-party libraries (TPLs) that Trilinos can interface with. - "-DBLAS_LIBRARY_NAMES=openblas" - "-DTPL_ENABLE_MPI=ON" - "-DTPL_ENABLE_MUMPS=ON" - "-DTPL_ENABLE_SCALAPACK=ON" - - ;; Enable the tests but not the examples (which are enabled by - ;; default when enabling tests). - ;; Although some examples are run as tests, they are otherwise - ;; unnecessary since this is a private package meant for - ;; dealii-openmpi. - ;; Besides, some MueLu and ROL examples require a lot of memory to - ;; compile. - ;; - ;; (For future reference, note that some ROL and SEACAS examples - ;; require removing gfortran from CPLUS_INCLUDE_PATH as in the - ;; dune-istl, dune-localfunctions and dune-alugrid packages.) - "-DTrilinos_ENABLE_TESTS=ON" - "-DTrilinos_ENABLE_EXAMPLES=OFF" - ;; MueLu tests require considerably more time and memory to compile - ;; than the rest of the tests. - "-DMueLu_ENABLE_TESTS=OFF" - - ;; The following options were gleaned from candi's trilinos.package. - ;; (We do not enable the complex instantiations, which are anyway - ;; provided only as an option in trilinos.package, because they are - ;; costly in compilation time and memory usage, and disk space [1].) - ;; - ;; [1]: https://www.docs.trilinos.org/files/TrilinosBuildReference.html#enabling-float-and-complex-scalar-types - "-DTrilinos_ENABLE_Ifpack2=OFF" - "-DTeuchos_ENABLE_FLOAT=ON" - "-DTpetra_INST_INT_LONG=ON" - "-DTPL_ENABLE_Boost=OFF") - #:phases - (modify-phases %standard-phases - (add-after 'configure 'fix-kokkos-config - (lambda _ - ;; GNU Make 4.3 accidentally leaves the backslash preceding the - ;; number sign in strings containing a literal backslash–number - ;; sign (\#) [1, 2]. - ;; This is still an issue in Trilinos 13.0.1, but should be fixed - ;; in the following version. - ;; (The latest versions of Kokkos incorporate the fix [2].) - ;; - ;; [1]: https://github.com/GEOSX/thirdPartyLibs/issues/136 - ;; [2]: https://github.com/kokkos/kokkos/blob/3.4.00/Makefile.kokkos#L441 - (substitute* "KokkosCore_config.h" - (("\\\\#") "#")) - #t)) - (add-before 'check 'mpi-setup - ,%openmpi-setup)))) + (list #:build-type "Release" + #:configure-flags + #~(list "-DBUILD_SHARED_LIBS=ON" + ;; Obtain the equivalent of RelWithDebInfo but with -O3 + ;; (the Release default) rather than -O2 (the + ;; RelWithDebInfo default), to conform to candi's + ;; trilinos.package's compilation flags, which are -g -O3. + "-DCMAKE_C_FLAGS=-g" + "-DCMAKE_CXX_FLAGS=-g" + "-DCMAKE_Fortran_FLAGS=-g" + + ;; Trilinos libraries that deal.II can interface with. + "-DTrilinos_ENABLE_Amesos=ON" + "-DTrilinos_ENABLE_AztecOO=ON" + "-DTrilinos_ENABLE_Epetra=ON" + "-DTrilinos_ENABLE_EpetraExt=ON" + "-DTrilinos_ENABLE_Ifpack=ON" + "-DTrilinos_ENABLE_ML=ON" + "-DTrilinos_ENABLE_MueLu=ON" + "-DTrilinos_ENABLE_ROL=ON" + ;; Optional; required for deal.II's GridIn::read_exodusii, + ;; but depends on netcdf. + ;; Enable if and when someone needs it. + ;;"-DTrilinos_ENABLE_SEACAS=ON" + "-DTrilinos_ENABLE_Sacado=ON" + "-DTrilinos_ENABLE_Teuchos=ON" + "-DTrilinos_ENABLE_Tpetra=ON" + "-DTrilinos_ENABLE_Zoltan=ON" + + ;; Third-party libraries (TPLs) that Trilinos can interface + ;; with. + "-DBLAS_LIBRARY_NAMES=openblas" + "-DTPL_ENABLE_MPI=ON" + "-DTPL_ENABLE_MUMPS=ON" + "-DTPL_ENABLE_SCALAPACK=ON" + + ;; Enable the tests but not the examples (which are enabled + ;; by default when enabling tests). + ;; Although some examples are run as tests, they are + ;; otherwise unnecessary since this is a private package + ;; meant for dealii-openmpi. + ;; Besides, some MueLu and ROL examples require a lot of + ;; memory to compile. + ;; + ;; (For future reference, note that some ROL and SEACAS + ;; examples require removing gfortran from + ;; CPLUS_INCLUDE_PATH as in the dune-istl, + ;; dune-localfunctions and dune-alugrid packages.) + "-DTrilinos_ENABLE_TESTS=ON" + "-DTrilinos_ENABLE_EXAMPLES=OFF" + ;; MueLu tests require considerably more time and memory to + ;; compile than the rest of the tests. + "-DMueLu_ENABLE_TESTS=OFF" + + ;; The following options were gleaned from candi's + ;; trilinos.package. + ;; (We do not enable the complex instantiations, which are + ;; anyway provided only as an option in trilinos.package, + ;; because they are costly in compilation time and memory + ;; usage, and disk space [1].) + ;; + ;; [1]: https://www.docs.trilinos.org/files/TrilinosBuildReference.html#enabling-float-and-complex-scalar-types + "-DTrilinos_ENABLE_Ifpack2=OFF" + "-DTeuchos_ENABLE_FLOAT=ON" + "-DTpetra_INST_INT_LONG=ON" + "-DTPL_ENABLE_Boost=OFF") + #:phases + #~(modify-phases %standard-phases + (add-after 'configure 'fix-kokkos-config + (lambda _ + ;; GNU Make 4.3 accidentally leaves the backslash preceding + ;; the number sign in strings containing a literal + ;; backslash–number sign (\#) [1, 2]. + ;; This is still an issue in Trilinos 13.0.1, but should be + ;; fixed in the following version. + ;; (The latest versions of Kokkos incorporate the fix [2].) + ;; + ;; [1]: https://github.com/GEOSX/thirdPartyLibs/issues/136 + ;; [2]: https://github.com/kokkos/kokkos/blob/3.4.00/Makefile.kokkos#L441 + (substitute* "KokkosCore_config.h" + (("\\\\#") "#")))) + (add-before 'check 'mpi-setup + #$%openmpi-setup)))) (home-page "https://trilinos.github.io/") (synopsis "Algorithms for engineering and scientific problems") (description |