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-rw-r--r--gnu/packages/statistics.scm162
1 files changed, 86 insertions, 76 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7ff56d7355..3588cb459a 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015-2023 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Vicente Vera Parra <vicentemvp@gmail.com>
;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016, 2017, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il>
@@ -508,14 +508,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.")
(define-public r-mass
(package
(name "r-mass")
- (version "7.3-58.2")
+ (version "7.3-58.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "MASS" version))
(sha256
(base32
- "0jvqvlmb1fjqhcnix1blj7hjiyxy7m1rfjdv3sr2nhyad19rvh5m"))))
+ "1bkrbhm230nm4px1rw93mxhigpvivinj22f7r4mx786whaamkra2"))))
(properties `((upstream-name . "MASS")))
(build-system r-build-system)
(home-page "https://www.stats.ox.ac.uk/pub/MASS4/")
@@ -700,13 +700,13 @@ nonlinear mixed-effects models.")
(define-public r-mgcv
(package
(name "r-mgcv")
- (version "1.8-41")
+ (version "1.8-42")
(source
(origin
(method url-fetch)
(uri (cran-uri "mgcv" version))
(sha256
- (base32 "14769zs1sh1bz3c87hs4vhy2y9n28vglfqfrdgpysxdyw87h6yig"))))
+ (base32 "1ixn5pgc3qriy5nfd264dz7l126xg4k4zidgkqag41mdcj5w6zq8"))))
(build-system r-build-system)
(propagated-inputs
(list r-matrix r-nlme))
@@ -780,14 +780,14 @@ analysis.")
(define-public r-survival
(package
(name "r-survival")
- (version "3.5-0")
+ (version "3.5-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "survival" version))
(sha256
(base32
- "12nwvfa921m546acxiidpif6g1laz1h1vxbwc45ww69wdc51gcmq"))))
+ "0xl4arr70xqc7rnix9x9w83985ry0wpcmfi79vh5h0jbal4sax8k"))))
(build-system r-build-system)
(propagated-inputs
(list r-matrix))
@@ -1235,17 +1235,16 @@ using just two functions: melt and dcast (or acast).")
(define-public r-ggplot2
(package
(name "r-ggplot2")
- (version "3.4.0")
+ (version "3.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggplot2" version))
(sha256
- (base32 "0gj7n2y8msnmhk3x4r481biknvn2dqhahwazfqwr8f3lz599wbx8"))))
+ (base32 "113d5khg0lswrbwasavl2l5jgpcd3h519mcb5iq2cq0dz4rw66q4"))))
(build-system r-build-system)
(propagated-inputs
(list r-cli
- r-digest
r-glue
r-gtable
r-isoband
@@ -1300,21 +1299,27 @@ agnes cluster diagrams.")
(define-public r-gdtools
(package
(name "r-gdtools")
- (version "0.3.0")
+ (version "0.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "gdtools" version))
(sha256
(base32
- "1lkyzavgdivxmpvyqx81caizy1yrr8xp47qzgmfcn6k4inrn51jl"))))
+ "0dji1iyf6x9vg6gjklzkb3x9vfydfi95idkvckj6208b1rwgwsj4"))))
(build-system r-build-system)
(native-inputs
(list pkg-config))
(inputs
- (list cairo fontconfig freetype zlib))
+ (list cairo fontconfig freetype))
(propagated-inputs
- (list r-gfonts r-htmltools r-memoise r-rcpp r-systemfonts))
+ (list r-curl
+ r-fontquiver
+ r-gfonts
+ r-htmltools
+ r-memoise
+ r-rcpp
+ r-systemfonts))
(home-page "https://cran.r-project.org/web/packages/gdtools")
(synopsis "Utilities for graphical rendering")
(description
@@ -1703,13 +1708,13 @@ R packages that praise their users.")
(define-public r-testthat
(package
(name "r-testthat")
- (version "3.1.6")
+ (version "3.1.7")
(source (origin
(method url-fetch)
(uri (cran-uri "testthat" version))
(sha256
(base32
- "1bndjkwv6f9x3a0wklwnf7bymn655yhw6cmazb285hbmci0qrjx7"))))
+ "1awfcpabn6f7rdi7lvdj6hzm3gq6qzn38rls6m36q72874bnpn0s"))))
(build-system r-build-system)
(propagated-inputs
(list r-brio
@@ -1764,13 +1769,13 @@ defined in different packages.")
(define-public r-rlang
(package
(name "r-rlang")
- (version "1.0.6")
+ (version "1.1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "rlang" version))
(sha256
(base32
- "0q372q8cdc3c5pf8pmjyp7qc7lb5krg47apfl46iqc7al2c3v5z6"))))
+ "0nrk9634l05bsn9kl9zf0ylqvm9swlzic8fggkyhbp4y3kcmk67q"))))
(build-system r-build-system)
(home-page "http://rlang.tidyverse.org")
(synopsis "Functions for base types, core R and Tidyverse features")
@@ -1782,14 +1787,14 @@ like tidy evaluation.")
(define-public r-tibble
(package
(name "r-tibble")
- (version "3.1.8")
+ (version "3.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "tibble" version))
(sha256
(base32
- "1spdbk5s0wlipfq8jc08p2mk5fq2ql9hm8iwwlfzdlhqbl3hxwxc"))))
+ "12i9cshnj2lygadh03zjw1zn5dr13wspcrq2dprl5qrrr95z2bwg"))))
(build-system r-build-system)
(propagated-inputs
(list r-fansi
@@ -1848,18 +1853,17 @@ database.")
(define-public r-dbplyr
(package
(name "r-dbplyr")
- (version "2.3.0")
+ (version "2.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "dbplyr" version))
(sha256
(base32
- "1zqz2ml4pgi93miz5flxmm7cjlh4w33hi45phyvv89i9gxp4a387"))))
+ "0a5cnh0fr81mak9ccqr91nsjqlxsnf6a2lmwrsgv7g1sjag0b4p1"))))
(build-system r-build-system)
(propagated-inputs
- (list r-assertthat
- r-blob
+ (list r-blob
r-cli
r-dbi
r-dplyr
@@ -1871,6 +1875,7 @@ database.")
r-r6
r-rlang
r-tibble
+ r-tidyr
r-tidyselect
r-vctrs
r-withr))
@@ -1909,14 +1914,14 @@ transformations.")
(define-public r-formula
(package
(name "r-formula")
- (version "1.2-4")
+ (version "1.2-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "Formula" version))
(sha256
(base32
- "1bsw282i5m8rlirbhz7hqvf25zbxschk7yrp152whbzdnmry6w6b"))))
+ "0p1m9pqcn8ns0sn67js53677q8gwxgbl4bymcn5y2r0dc1s4c9c6"))))
(properties `((upstream-name . "Formula")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/Formula")
@@ -1952,13 +1957,13 @@ and density estimation.")
(define-public r-chron
(package
(name "r-chron")
- (version "2.3-59")
+ (version "2.3-60")
(source (origin
(method url-fetch)
(uri (cran-uri "chron" version))
(sha256
(base32
- "1xh18s4mip3xc9vn2xw6a2gpz09s3zmxw8sarn6qbrs2gjwschxr"))))
+ "1vlifh316q76g4015126am158i702mi88xjpzj3ylv2vqp77a1hf"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/chron")
(synopsis "Chronological R objects which can handle dates and times")
@@ -1970,13 +1975,13 @@ times.")
(define-public r-data-table
(package
(name "r-data-table")
- (version "1.14.6")
+ (version "1.14.8")
(source (origin
(method url-fetch)
(uri (cran-uri "data.table" version))
(sha256
(base32
- "05h99rk2s1ds9igrqw2nhnk6yahgssszqlnw0y0p9p83lsndp30x"))))
+ "1z9rf5anjvg3bmbbajb12nf65jsxdw35ad9piysrp76zcx9wxchl"))))
(properties `((upstream-name . "data.table")))
(build-system r-build-system)
(inputs
@@ -2415,14 +2420,14 @@ other packages.")
(define-public r-commonmark
(package
(name "r-commonmark")
- (version "1.8.1")
+ (version "1.9.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "commonmark" version))
(sha256
(base32
- "1gjwpmcxv15y1jg9f7kzp49s68kj1skjsh5g264f9lp37l4wpbcn"))))
+ "13slfv9xpd5fhccw6xgm274d338gmpvc4sdzd943dm684rd1ml3d"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/commonmark")
(synopsis "CommonMark and Github Markdown Rendering in R")
@@ -2473,14 +2478,14 @@ collation, and NAMESPACE files.")
(define-public r-openssl
(package
(name "r-openssl")
- (version "2.0.5")
+ (version "2.0.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "openssl" version))
(sha256
(base32
- "1lw60yq20r42l7y1wbp79s3mk3dwg62v0dh7jx1cdd7rb46i9hla"))))
+ "1wxkq613054ic0w58a41fyr7bp7f939vhsgj6hbhs3r72qm07wvp"))))
(build-system r-build-system)
(arguments
(list
@@ -2515,13 +2520,13 @@ integers.")
(define-public r-httr
(package
(name "r-httr")
- (version "1.4.4")
+ (version "1.4.5")
(source (origin
(method url-fetch)
(uri (cran-uri "httr" version))
(sha256
(base32
- "0pa3ypkq6kq6sw7b8w62rfpcbjwhc49y8nkvk900s9pfycijbn21"))))
+ "0v3gyzgwv6v3rmpr5sfks8ygp1inmrddsiyamfcz039bi1zsqfzr"))))
(build-system r-build-system)
(propagated-inputs
(list r-curl r-jsonlite r-openssl r-mime r-r6))
@@ -2665,13 +2670,13 @@ time-of-day values, based on the @code{difftime} class.")
(define-public r-readr
(package
(name "r-readr")
- (version "2.1.3")
+ (version "2.1.4")
(source (origin
(method url-fetch)
(uri (cran-uri "readr" version))
(sha256
(base32
- "0qw2c51421zzfwpy1nkmxs9ai1r9m4yxrz0ig0wg2z78h1gda3fp"))))
+ "03gbzf29kdvf4rdqgdq2jm7c9ifjla3qzpiyqzw1x9jgijj4y54q"))))
(build-system r-build-system)
(propagated-inputs
(list r-cli
@@ -2760,13 +2765,13 @@ well as additional utilities such as panel and axis annotation functions.")
(define-public r-rcpparmadillo
(package
(name "r-rcpparmadillo")
- (version "0.11.4.3.1")
+ (version "0.12.0.1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RcppArmadillo" version))
(sha256
(base32
- "0pk14pv3q3ykdj8pcgj3z1mkfiw9lbn5ny01hydc0mx98yj4lc2w"))))
+ "1spvsfzkzfw4l0igj2cx9ba3l2hwzqj180vndn4imdy0g4xibikk"))))
(properties `((upstream-name . "RcppArmadillo")))
(build-system r-build-system)
(propagated-inputs
@@ -2885,15 +2890,20 @@ variety of formats.")
(define-public r-gtable
(package
(name "r-gtable")
- (version "0.3.1")
+ (version "0.3.2")
(source (origin
(method url-fetch)
(uri (cran-uri "gtable" version))
(sha256
(base32
- "1dbwxhxawwbmaixwxxglazv5bici56qvmjk7sqa8j66m49bjrmlb"))))
+ "1j162vkyvkyyz61smw36crgmd76jic17n9qfmn0cyvafzdyqyiwd"))))
(properties `((upstream-name . "gtable")))
(build-system r-build-system)
+ (propagated-inputs
+ (list r-cli
+ r-glue
+ r-lifecycle
+ r-rlang))
(native-inputs
(list r-knitr))
(home-page "https://cran.r-project.org/web/packages/gtable")
@@ -2948,13 +2958,13 @@ that package, other packages are unaffected.")
(define-public r-blob
(package
(name "r-blob")
- (version "1.2.3")
+ (version "1.2.4")
(source (origin
(method url-fetch)
(uri (cran-uri "blob" version))
(sha256
(base32
- "06v3ldnmf6f99riym1cjbm5rklxmg6cpdixm6armc6rxxs1xd21d"))))
+ "13vjy9f3zki8w1damz6kqq47689mk4l1navnwh7r6z8lqkmj52fh"))))
(build-system r-build-system)
(propagated-inputs
(list r-rlang r-vctrs))
@@ -2969,22 +2979,22 @@ a column in data frame.")
(define-public r-rsqlite
(package
(name "r-rsqlite")
- (version "2.2.20")
+ (version "2.3.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RSQLite" version))
(sha256
(base32
- "1km7rg2yg3lmjz7lplypw61sx78mykyksgbdq3j5kjpcvirdbdaj"))))
+ "0csx2zz4zlr11nrzcas1lzhzjb4ygv6nijg2jpkp5l4fs2hijbj4"))))
(properties `((upstream-name . "RSQLite")))
(build-system r-build-system)
(propagated-inputs
- (list r-dbi
+ (list r-bit64
+ r-blob
+ r-cpp11
+ r-dbi
r-memoise
r-plogr
- r-rcpp
- r-bit64
- r-blob
r-pkgconfig))
(native-inputs
(list r-knitr))
@@ -3041,13 +3051,13 @@ ldap, and also supports cookies, redirects, authentication, etc.")
(define-public r-xml
(package
(name "r-xml")
- (version "3.99-0.13")
+ (version "3.99-0.14")
(source (origin
(method url-fetch)
(uri (cran-uri "XML" version))
(sha256
(base32
- "0fppx0jnqxx3l7y8ivb56sq0fjcqv3fn226i4s03mi7hwak6iic5"))))
+ "1ygi65ddgbsamxw2rm0p2clfak1xj44xyisgk48y72cd9ldaddic"))))
(properties
`((upstream-name . "XML")))
(build-system r-build-system)
@@ -3629,13 +3639,13 @@ using the multicore functionality of the parallel package.")
extensions)))))
(package
(name "r-dt")
- (version "0.26")
+ (version "0.27")
(source (origin
(method url-fetch)
(uri (cran-uri "DT" version))
(sha256
(base32
- "0303yxvzi8ln677716pv7m6fih5dclfqw9aram0lzm16w4mr64n4"))
+ "16i82f380ibl0caqvkg010zbxzav0iwwxac8zwy96c745g6xqbz3"))
(modules '((guix build utils)
(ice-9 match)))
(snippet
@@ -3821,14 +3831,14 @@ path-wise fashion.")
(define-public r-pkgmaker
(package
(name "r-pkgmaker")
- (version "0.32.7")
+ (version "0.32.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "pkgmaker" version))
(sha256
(base32
- "0c7njqwi3szr7dhw3vglgjf2y1hwv0imgb4wfgp42pizsqmacin6"))))
+ "0i8prn63miajx7wlil5dchasqnjp054gwp0h7x6586q55j6mgwqg"))))
(build-system r-build-system)
(propagated-inputs
(list r-assertthat
@@ -4649,13 +4659,13 @@ package instead.")
(define-public r-hmisc
(package
(name "r-hmisc")
- (version "4.7-2")
+ (version "5.0-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "Hmisc" version))
(sha256
- (base32 "0lyacs5q6mdg9lirixl9r2dqs9ljxyn5d53mmb04ci0jam3vk0wc"))))
+ (base32 "0ngsm05ngzchy4l8a6fww3m2qqz8m04rcbl1zg7va30mia7hyffv"))))
(properties `((upstream-name . "Hmisc")))
(build-system r-build-system)
(native-inputs
@@ -4663,19 +4673,19 @@ package instead.")
(propagated-inputs
(list r-base64enc
r-cluster
+ r-colorspace
r-data-table
r-foreign
r-formula
r-ggplot2
r-gridextra
r-gtable
- r-lattice
- r-latticeextra
+ r-knitr
r-htmltable
r-htmltools
r-nnet
+ r-rmarkdown
r-rpart
- r-survival
r-viridis))
(home-page "http://biostat.mc.vanderbilt.edu/Hmisc")
(synopsis "Miscellaneous data analysis and graphics functions")
@@ -5289,14 +5299,14 @@ to change in the future.")
(define-public r-flexmix
(package
(name "r-flexmix")
- (version "2.3-18")
+ (version "2.3-19")
(source
(origin
(method url-fetch)
(uri (cran-uri "flexmix" version))
(sha256
(base32
- "0lcvsvmhkbwac50l109an6prl1ng4mkyvr436344b20897ph28j6"))))
+ "1s8jpii6ws6hra8w11fn3x84wrdrrlycnrhn5ijy6ibdpc6a9xdd"))))
(build-system r-build-system)
(propagated-inputs
(list r-lattice r-modeltools r-nnet))
@@ -5555,13 +5565,13 @@ groupings.")
(define-public r-vgam
(package
(name "r-vgam")
- (version "1.1-7")
+ (version "1.1-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "VGAM" version))
(sha256
- (base32 "0zkmj7crkkvi7ki88f6vfn7x8gf0ycrbg13wann7wirj4cwjvid4"))))
+ (base32 "1k6i18ywfh0xlc7ipgvz1g9gdgkyz5phf1cwyfv8mn2nwgag3h6l"))))
(properties `((upstream-name . "VGAM")))
(build-system r-build-system)
(native-inputs
@@ -5749,14 +5759,14 @@ algorithms.")
(define-public r-lme4
(package
(name "r-lme4")
- (version "1.1-31")
+ (version "1.1-32")
(source
(origin
(method url-fetch)
(uri (cran-uri "lme4" version))
(sha256
(base32
- "1zgdfbzc8lv4rrsjdacagwa693ij2bmn6xkc1bnfbv1z7pix3zss"))))
+ "0j03qn6l8zxlwnrkr1vyrgfcczf1wkrmczyvf3ncd5ad72jcnijy"))))
(build-system r-build-system)
(propagated-inputs
(list r-boot
@@ -6076,14 +6086,14 @@ is supported.")
(define-public r-lubridate
(package
(name "r-lubridate")
- (version "1.9.1")
+ (version "1.9.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "lubridate" version))
(sha256
(base32
- "1brjq18lbnn2r6qiysmps9276rx691a36qiw66x8hrqv55vwxa8d"))))
+ "19s4cm6a73b9q519mmgf2qxjmd2bsjff19ds3hk8ksgz98d46xl9"))))
(build-system r-build-system)
(propagated-inputs
(list r-generics r-timechange))
@@ -6597,7 +6607,7 @@ files, including Rmarkdown files.")
(define-public readstat
(package
(name "readstat")
- (version "1.1.8")
+ (version "1.1.9")
(source
(origin
(method git-fetch)
@@ -6606,16 +6616,16 @@ files, including Rmarkdown files.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1r04lq45h1yn34v1mgfiqjfzyaqv4axqlby0nkandamcsqyhc7y4"))))
+ (base32 "0aqalr86d7h9sp9zjkydw3ap4s54qgq2ml6p8gd0gnn1jf0ljm72"))))
(build-system gnu-build-system)
(native-inputs
(list autoconf automake gnu-gettext libtool))
(inputs
- (list zlib)) ; libz
+ (list zlib))
+ (home-page "https://github.com/WizardMac/ReadStat")
(synopsis "Convert SAS, Stata, and SPSS files")
(description "Command-line tool and C library for reading files from
popular stats packages like SAS, Stata and SPSS.")
- (home-page "https://github.com/WizardMac/ReadStat")
(license license:expat)))
(define-public r-quantpsyc
@@ -7087,13 +7097,13 @@ Calculates confidence intervals for the difference in proportion.")
(define-public r-desctools
(package
(name "r-desctools")
- (version "0.99.47")
+ (version "0.99.48")
(source
(origin
(method url-fetch)
(uri (cran-uri "DescTools" version))
(sha256
- (base32 "0dd1n2dwyh8sdsmmsqj670hmawffqck35qdanrgb4yfcc0zzmd1j"))))
+ (base32 "0axn9sgv8cwzmrnwrpbla8zcfpii1xlsyjxbgk85xlcsmv05iq6v"))))
(properties `((upstream-name . "DescTools")))
(build-system r-build-system)
(propagated-inputs
@@ -7109,7 +7119,7 @@ Calculates confidence intervals for the difference in proportion.")
r-rcpp
r-readxl
r-rstudioapi))
- (native-inputs (list gfortran))
+ (native-inputs (list gfortran r-r-rsp))
(home-page "https://andrisignorell.github.io/DescTools/")
(synopsis "Tools for Descriptive Statistics")
(description
generated by cgit