diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 145 |
1 files changed, 79 insertions, 66 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 36dda6f215..6e57eb2f4f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -550,14 +550,14 @@ k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.") (define-public r-cluster (package (name "r-cluster") - (version "2.1.3") + (version "2.1.4") (source (origin (method url-fetch) (uri (cran-uri "cluster" version)) (sha256 (base32 - "1ab466lniykz2a6kdnrbkk7hwair79xfmy6cqvhc8d6nana7mbd3")))) + "1dpmss4mdpw6la5kjf135h2jj5j5zmqvykpj6fl6n5wslbn0rwf6")))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -655,14 +655,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.4-1") + (version "1.5-1") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "0zigzgx4dv7ydcyppr5ypna9dxi9vzi944pgy07jnj4l3qflzcj2")))) + "0pap6pb0is2s02l43y982p7banwi844bjpgbcgf6fb8pb01vlzam")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -677,13 +677,13 @@ and operations on them using LAPACK and SuiteSparse.") (define-public r-nlme (package (name "r-nlme") - (version "3.1-158") + (version "3.1-159") (source (origin (method url-fetch) (uri (cran-uri "nlme" version)) (sha256 - (base32 "08xzaslqmbizj38v746hn09bi7k9h0vjhh0z7mv0c9xsq80v8nx5")))) + (base32 "1gqrv4skfgcny4pdpmymdwjcmsd3hla84s76g18dgqj665f5zc4v")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -779,14 +779,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.3-1") + (version "3.4-0") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "1isdrcvrzi118xiyigckj9sq1xl4m92180brmpzdqzhcrl2qg1ql")))) + "04pqkklbjpcqaq49h49j0vw18q4hi31ry3szzf84vzk5fba273m4")))) (build-system r-build-system) (propagated-inputs (list r-matrix)) @@ -1186,16 +1186,21 @@ transliteration, concatenation, date-time formatting and parsing, etc.") (define-public r-stringr (package (name "r-stringr") - (version "1.4.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "stringr" version)) (sha256 - (base32 "1p9ip7p87gbbg4s6d3d392svvzz2b5dqdq2c8ilgvn4s78nlsq47")))) + (base32 "1cfw1lv64lzg16zb04c0fcmd3gx8vq9x73hqikqhgqd3ra88w3gc")))) (build-system r-build-system) (propagated-inputs (list r-glue r-magrittr r-stringi)) + ;; We can't add r-knitr here, because this package ends up being an input + ;; to r-knitr. + #; + (native-inputs + (list r-knitr)) (home-page "https://github.com/hadley/stringr") (synopsis "Simple, consistent wrappers for common string operations") (description @@ -1421,13 +1426,13 @@ for template use among CRAN packages.") (define-public r-evaluate (package (name "r-evaluate") - (version "0.15") + (version "0.16") (source (origin (method url-fetch) (uri (cran-uri "evaluate" version)) (sha256 (base32 - "0pbwj02y2j7r0msa7747ih1p32xm9bcyr8fa7bysfslb199ywnl8")))) + "009861l805z4c10cz0pyym5qd2b2wsiignjkz74vl25718k0mz0h")))) (build-system r-build-system) (home-page "https://github.com/hadley/evaluate") (synopsis "Parsing and evaluation tools for R") @@ -1551,13 +1556,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.39") + (version "1.40") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "0wmcj6xv0bcqzmp5vm8s574rfx366rkgm03lgyppk9ywxgnna6n9")))) + "1g1mhnkyxd2sv6p1l6iph9dnmpbwxhah78xx4kq543ks6vzrb3wv")))) (build-system r-build-system) (propagated-inputs (list r-evaluate r-highr r-stringr r-xfun r-yaml)) @@ -1756,13 +1761,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "1.0.4") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "15l65as409b3y9sn1jm7lb2019jsp19w6qxsgvimr1badka8kdqz")))) + "1argj8pvf8b19693r6j7rw1fl4bd99b39h5y52qrm1wpcvjkba9d")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1803,13 +1808,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "1.0.9") + (version "1.0.10") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "0sxl9yzccsdhlrrwj26lmh9frsijxyfaf7csv8mf7d0q4qqzgqg2")))) + "0aqggs0gk95b326gzqjab8i27cna1hzik3zi5l2kkr5l4zv3kdis")))) (build-system r-build-system) (propagated-inputs (list r-generics @@ -2173,13 +2178,13 @@ jackknifed confidence intervals are available for most estimates.") (define-public r-rversions (package (name "r-rversions") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "rversions" version)) (sha256 (base32 - "1cbwwbz8lqx2n33xr4q904whvld22s63rpyy1nn93395l7ssrakr")))) + "0q5ip3rkhcxz7472fbqddrw3a2wm31b18w7ax0pi6wc27qiihn6y")))) (build-system r-build-system) (propagated-inputs (list r-curl r-xml2)) @@ -2353,14 +2358,14 @@ module, Java Server Pages, and Python's psp module.") (define-public r-desc (package (name "r-desc") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "desc" version)) (sha256 (base32 - "0m3g5m0g08k674zh4lq0ihmqiwz8jpsfqrdwfqp5p4ngxi8vp7lg")))) + "0z1259ghccmrjylydra4bpryqasirsky7bc4gsx0k327pqacz2km")))) (build-system r-build-system) (propagated-inputs (list r-cli r-r6 r-rprojroot)) @@ -2434,14 +2439,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "2.0.2") + (version "2.0.3") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "1i7il5kkr1yp2xk8zw7max4llga4hfz0cx9sx0v2xnb9pg4ksbc6")))) + "1al6cb0qwafa32dxr2hhhv6hvbp26hiykamn7w27z1gc1d99ipkw")))) (build-system r-build-system) (arguments (list @@ -2476,13 +2481,13 @@ integers.") (define-public r-httr (package (name "r-httr") - (version "1.4.3") + (version "1.4.4") (source (origin (method url-fetch) (uri (cran-uri "httr" version)) (sha256 (base32 - "0skwi501rzndywn81704d68n1l6lrvqilf91q08cjfhpjvx171ls")))) + "0pa3ypkq6kq6sw7b8w62rfpcbjwhc49y8nkvk900s9pfycijbn21")))) (build-system r-build-system) (propagated-inputs (list r-curl r-jsonlite r-openssl r-mime r-r6)) @@ -2523,13 +2528,13 @@ pure C implementation of the Git core methods.") (define-public r-rstudioapi (package (name "r-rstudioapi") - (version "0.13") + (version "0.14") (source (origin (method url-fetch) (uri (cran-uri "rstudioapi" version)) (sha256 (base32 - "12vdfzzjc6mv4h105l8cp108j3hjk0mqmg23m6mqr3jarfymphxa")))) + "1i5g9l2739mlaglzg98iifycx98jlzxj5933qfb8lwmdn63hk7a6")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -2605,14 +2610,14 @@ were originally a part of the r-devtools package.") (define-public r-hms (package (name "r-hms") - (version "1.1.1") + (version "1.1.2") (source (origin (method url-fetch) (uri (cran-uri "hms" version)) (sha256 (base32 - "0qlh4s1g9rbm6c3s906dhw3xsz28m8fg6cyynlkhvis533dk0pvb")))) + "1vdx08irnh8q5232hriv47hh88hc55nbbrff7y6zbainff2akrhy")))) (build-system r-build-system) (propagated-inputs (list r-ellipsis r-lifecycle r-pkgconfig r-rlang r-vctrs)) @@ -2721,13 +2726,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.11.2.0.0") + (version "0.11.2.4.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0f0rrv254jd66m80vm4bmk3yrnyw1kdfgdki6zbcih7mbvw7mqgr")))) + "1y499idmci72x6gpj855vf4rlzh1r2qqpxyzs53r59ay8f4g0jar")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -2813,13 +2818,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.14") + (version "2.16") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "081j1hpxcwadn606ch5lq279s66c1b0f0mjvap7yimnrljpigv79")))) + (base32 "0wgsc5ax4wynviasyxr240fkjk0g1wm9aq7b42mx66f43424xlyk")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2846,15 +2851,17 @@ variety of formats.") (define-public r-gtable (package (name "r-gtable") - (version "0.3.0") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "gtable" version)) (sha256 (base32 - "1lyncxf2dqdjgw1071cn9c8zwzkz6sldnd5cgmicf70bc726qf7x")))) + "1dbwxhxawwbmaixwxxglazv5bici56qvmjk7sqa8j66m49bjrmlb")))) (properties `((upstream-name . "gtable"))) (build-system r-build-system) + (native-inputs + (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/gtable") (synopsis "R library to arrange grobs in tables") (description @@ -2928,13 +2935,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.2.15") + (version "2.2.17") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "1cypz9i85fnp3izk0px9r8s3l1jwn5kmgs2avc0fi3fad1775029")))) + "16l64ganvdlaldmqryz2c95id2m8vchlj9x5rz9kppbmhy122vjw")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -3346,9 +3353,8 @@ using the multicore functionality of the parallel package.") ("https://cdn.datatables.net/buttons/1.6.1/js/buttons.bootstrap4.js" "0hfclipg43wr9p7irrcn9vp5wji8z7gz6y5mclkq88z1mlpwklzf" "datatables-extensions/Buttons") - ;; It is not clear what version the bundled file corresponds to. - ("https://cdnjs.cloudflare.com/ajax/libs/jszip/2.5.0/jszip.js" - "18hpj9vwgki56ijb20l5gwmqa5p1d0xprn57z2mlg3ph6ll0bdkd" + ("https://cdnjs.cloudflare.com/ajax/libs/jszip/3.10.1/jszip.js" + "01l5lw49jz2qn6k9i63dk4llar4lvvpd6xp6i45mpwfk49fbxqg2" "datatables-extensions/Buttons") ("https://cdnjs.cloudflare.com/ajax/libs/pdfmake/0.1.36/pdfmake.js" "1sfw80az2cgzin5wk7q1p2n9zm66c35cz0m6isdygml81i594wia" @@ -3564,13 +3570,13 @@ using the multicore functionality of the parallel package.") "datatables-extensions/Select")))) (package (name "r-dt") - (version "0.23") + (version "0.25") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "0w6wgiwa3zgldp175a3q7zfw853xqc7mfj34n6hja48ln7yf42in")) + "0as43h4minnz5c09nvbvq8b1d9506mzkcdl98bhf87rf0q9qgz0d")) (modules '((guix build utils))) (snippet '(for-each delete-file @@ -4132,14 +4138,14 @@ most common form of color blindness.") (define-public r-viridislite (package (name "r-viridislite") - (version "0.4.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "viridisLite" version)) (sha256 (base32 - "0siwr0vq80gs3sbyd542zjb0cl9av5zqdm0fqnym5g6ribf5b6c4")))) + "15zaf2c7kzjf3i0g7y8w6jlgfkpprqj2zl346y5imz75r8fdp5m8")))) (properties `((upstream-name . "viridisLite"))) (build-system r-build-system) (home-page "https://github.com/sjmgarnier/viridisLite") @@ -4183,14 +4189,14 @@ selection.") (define-public r-tidyr (package (name "r-tidyr") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "tidyr" version)) (sha256 (base32 - "1a0k296a0jb2xi5zgfrqfmmw8197bwibjl7a04fm49vqx6livl4c")))) + "1bv1rvnbbfdqf78qfbawq3yxjhjfdy0mgcla6b17bp336rnpcwb9")))) (build-system r-build-system) (propagated-inputs (list r-cpp11 @@ -4445,14 +4451,14 @@ following problems: (define-public r-base64 (package (name "r-base64") - (version "2.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "base64" version)) (sha256 (base32 - "1labh0ycdm2xcjssj8bhnyjvbk44mcdsi0rb2p8rfqa428mrq9cf")))) + "1w9m4n29xmj7px8fbmha04vq146bxfqi7ipj1ag09hlm05y6h8jd")))) (build-system r-build-system) (propagated-inputs (list r-openssl)) @@ -4467,13 +4473,13 @@ package instead.") (define-public r-hmisc (package (name "r-hmisc") - (version "4.7-0") + (version "4.7-1") (source (origin (method url-fetch) (uri (cran-uri "Hmisc" version)) (sha256 - (base32 "1gc71wg6f17x6nriphs1kk39ix7lpqk32clk1qshqy8wl6f2vv19")))) + (base32 "0zrfi2mmi6wfl6440iqflzzmkina8dhxia2qsamqw6djd0d5fp9j")))) (properties `((upstream-name . "Hmisc"))) (build-system r-build-system) (native-inputs @@ -4858,13 +4864,13 @@ Wall Street Journal, among others. This package also provides (define-public r-statmod (package (name "r-statmod") - (version "1.4.36") + (version "1.4.37") (source (origin (method url-fetch) (uri (cran-uri "statmod" version)) (sha256 (base32 - "1hkvklcav6gj4zib4g3b4xwsdsbsmnzdblr0v6jaqv227p49gs0l")))) + "04v9nynv3lakhnd7b17v5syrlnscrxml71jnd3r93chckskwillh")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/statmod") (native-inputs @@ -5245,14 +5251,14 @@ analysis} (PCA) by projection pursuit.") (define-public r-rrcov (package (name "r-rrcov") - (version "1.7-0") + (version "1.7-1") (source (origin (method url-fetch) (uri (cran-uri "rrcov" version)) (sha256 (base32 - "1z98j9973hl19b70dcwfcf55ifxr2a9v53daaq2sagynh95aik6b")))) + "1rd4r4acgpr25x2iy7v2mnahmmf76a378zq16gnpwv5ljycs05g1")))) (build-system r-build-system) (propagated-inputs (list r-lattice r-mvtnorm r-pcapp r-robustbase)) @@ -5486,14 +5492,14 @@ metrics for evaluating models.") (define-public r-matrixmodels (package (name "r-matrixmodels") - (version "0.5-0") + (version "0.5-1") (source (origin (method url-fetch) (uri (cran-uri "MatrixModels" version)) (sha256 (base32 - "1va6i6bpkq71rzl9i4xgyc5x7qcksa3nfzihlaggf6aj30dayzx8")))) + "1a9ywhv1yklfcp0jgirkih3ib5scs61hkscmyddwfh5blpgmpi9z")))) (properties `((upstream-name . "MatrixModels"))) (build-system r-build-system) (propagated-inputs @@ -5773,14 +5779,14 @@ first and second order derivatives.") (define-public r-sn (package (name "r-sn") - (version "2.0.2") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "sn" version)) (sha256 (base32 - "140p1pl5sq0laxhcm16kbqm986hlhqj90gj3jccga491gh14jywm")))) + "12s4g9rfrnijdil7bqw66ikj5k3w6bdnz6fsgqsp0bkfsap9nps9")))) (build-system r-build-system) (propagated-inputs (list r-mnormt r-numderiv r-quantreg)) @@ -5950,17 +5956,24 @@ and the corresponding decision threshold.") (define-public r-forcats (package (name "r-forcats") - (version "0.5.1") + (version "0.5.2") (source (origin (method url-fetch) (uri (cran-uri "forcats" version)) (sha256 (base32 - "12d2nv2w15085jscgidmjdnr1ryymciflcmal6ldmgp2fkl9dyy4")))) + "0hb1m16il1n8nmhp7hx8k2xxq8bd8kp3qqs2pw7xm0iz311hm9hl")))) (build-system r-build-system) (propagated-inputs - (list r-ellipsis r-magrittr r-tibble r-rlang)) + (list r-cli + r-ellipsis + r-glue + r-lifecycle + r-magrittr + r-tibble + r-rlang + r-withr)) (native-inputs (list r-knitr)) (home-page "https://forcats.tidyverse.org") @@ -6462,14 +6475,14 @@ mediation and estimating power.") (define-public r-clubsandwich (package (name "r-clubsandwich") - (version "0.5.7") + (version "0.5.8") (source (origin (method url-fetch) (uri (cran-uri "clubSandwich" version)) (sha256 (base32 - "1chq0bjz0yskm3cs8k6019j9v1m3fiz4p2ysk3xmqxlcihmnvv0b")))) + "1y894n35l4lzqm15ifxjnpnh95dldsfivv4098571yqf1z4a253q")))) (properties `((upstream-name . "clubSandwich"))) (build-system r-build-system) (propagated-inputs @@ -6901,13 +6914,13 @@ Calculates confidence intervals for the difference in proportion.") (define-public r-desctools (package (name "r-desctools") - (version "0.99.45") + (version "0.99.46") (source (origin (method url-fetch) (uri (cran-uri "DescTools" version)) (sha256 - (base32 "01gbmikpzjmymvb7p76k7wqvfvwznl6v0qa78jy7bi6fzmbp1zld")))) + (base32 "1f6jhvwgzv8mw5vmy7nqh8bpmrrzl36x1bq1ggnk3va24fcd01jq")))) (properties `((upstream-name . "DescTools"))) (build-system r-build-system) (propagated-inputs |