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Diffstat (limited to 'gnu/packages/patches/khmer-use-libraries.patch')
| -rw-r--r-- | gnu/packages/patches/khmer-use-libraries.patch | 16 |
1 files changed, 16 insertions, 0 deletions
diff --git a/gnu/packages/patches/khmer-use-libraries.patch b/gnu/packages/patches/khmer-use-libraries.patch new file mode 100644 index 0000000000..47d163a99a --- /dev/null +++ b/gnu/packages/patches/khmer-use-libraries.patch @@ -0,0 +1,16 @@ +Change setup.cfg so that the bundled zlib and bzip2 are not used. This cannot +currently be achieved using "--library z,bz2" as instructed in the setup.py. + +diff --git a/setup.cfg b/setup.cfg +index c054092..080992e 100644 +--- a/setup.cfg ++++ b/setup.cfg +@@ -1,7 +1,7 @@ + [build_ext] + define = SEQAN_HAS_BZIP2,SEQAN_HAS_ZLIB + undef = NO_UNIQUE_RC +-# libraries = z,bz2 ++libraries = z,bz2 + ## if using system libraries + include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include:third-party/smhasher + # include-dirs = lib |