diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 171 |
1 files changed, 78 insertions, 93 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 420f1894f3..d43f616e38 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1552,26 +1552,6 @@ extremely large and complex data collections.") (base32 "14gih7kmjx4h3lc7pg4fwcl28hf1qqkf2x7rljpxqvzkjrqbxi00")) (patches (search-patches "hdf5-config-date.patch")))))) -(define-public hdf5-1.12 - (package - (inherit hdf5-1.8) - (version "1.12.2") - (source - (origin - (method url-fetch) - (uri (list (string-append "https://support.hdfgroup.org/ftp/HDF5/releases/" - "hdf5-" (version-major+minor version) - "/hdf5-" version "/src/hdf5-" - version ".tar.bz2") - (string-append "https://support.hdfgroup.org/ftp/HDF5/" - "current" - (apply string-append - (take (string-split version #\.) 2)) - "/src/hdf5-" version ".tar.bz2"))) - (sha256 - (base32 "1zlawdzb0gsvcxif14fwr5ap2gk4b6j02wirr2hcx8hkcbivp20s")) - (patches (search-patches "hdf5-config-date.patch")))))) - (define-public hdf5-1.14 (package (inherit hdf5-1.8) @@ -2599,78 +2579,81 @@ fixed point (16.16) format.") (license license:expat)))) (define-public libflame - (package - (name "libflame") - (version "5.2.0") - (outputs '("out" "static")) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/flame/libflame") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1n6lf0wvpp77lxqlr721h2jbfbzigphdp19wq8ajiccilcksh7ay")))) - (build-system gnu-build-system) - (arguments - (list #:configure-flags - ;; Sensible defaults: https://github.com/flame/libflame/issues/28 - #~(list "--enable-dynamic-build" - "--enable-max-arg-list-hack" - "--enable-lapack2flame" - "--enable-verbose-make-output" - "--enable-multithreading=pthreads" ; Openblas isn't built with openmp. - #$@(if (target-x86?) - #~("--enable-vector-intrinsics=sse") - #~()) - "--enable-supermatrix" - "--enable-memory-alignment=16" - "--enable-ldim-alignment") - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'patch-/usr/bin/env-bash - (lambda _ - (substitute* "build/config.mk.in" - (("/usr/bin/env bash") - (which "bash"))))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (substitute* "test/Makefile" - (("LIBBLAS .*") - "LIBBLAS = -lblas\n") - (("LIBLAPACK .*") - "LIBLAPACK = -llapack\n")) - (when tests? - (with-directory-excursion "test" - (mkdir "obj") - (invoke "make") - (invoke "./test_libflame.x"))))) - (add-after 'install 'install-static - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (static (assoc-ref outputs "static"))) - (mkdir-p (string-append static "/lib")) - (rename-file (string-append out - "/lib/libflame.a") - (string-append static - "/lib/libflame.a")) - (install-file (string-append out - "/include/FLAME.h") - (string-append static "/include")))))))) - (inputs (list gfortran)) - (native-inputs (list lapack perl python-wrapper)) - (home-page "https://github.com/flame/libflame") - (synopsis "High-performance library for @acronym{DLA, dense linear algebra} computations") - (description "@code{libflame} is a portable library for dense matrix + ;; The latest release (5.2.0) dates back to 2019. Use a newer one, which + ;; among other things provides extra LAPACK symbols, such as 'dgemlq_' + ;; (needed by LAPACKe). + (let ((commit "70c19e770ead0ae846c59b59216deb16d236b40c") + (revision "0")) + (package + (name "libflame") + (version (git-version "5.2.0" revision commit)) + (outputs '("out" "static")) + (home-page "https://github.com/flame/libflame") + (source (origin + (method git-fetch) + (uri (git-reference (url home-page) (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0rk8ln5p4yybsws6p60w0vkxbqp53jddv90brlgf60mk6lv51sxl")))) + (build-system gnu-build-system) + (arguments + (list #:configure-flags + ;; Sensible defaults: https://github.com/flame/libflame/issues/28 + #~(list "--enable-dynamic-build" + "--enable-max-arg-list-hack" + "--enable-lapack2flame" + "--enable-verbose-make-output" + "--enable-multithreading=pthreads" ; Openblas isn't built with openmp. + #$@(if (target-x86?) + #~("--enable-vector-intrinsics=sse") + #~()) + "--enable-supermatrix" + "--enable-memory-alignment=16" + "--enable-ldim-alignment") + #:make-flags #~(list "FC=gfortran -fPIC") + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'patch-/usr/bin/env-bash + (lambda _ + (substitute* "build/config.mk.in" + (("/usr/bin/env bash") + (which "bash"))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (substitute* "test/Makefile" + (("LIBBLAS .*") + "LIBBLAS = -lblas\n") + (("LIBLAPACK .*") + "LIBLAPACK = -llapack\n")) + (when tests? + (with-directory-excursion "test" + (mkdir "obj") + (invoke "make") + (invoke "./test_libflame.x"))))) + (add-after 'install 'install-static + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (static (assoc-ref outputs "static"))) + (mkdir-p (string-append static "/lib")) + (rename-file (string-append out + "/lib/libflame.a") + (string-append static + "/lib/libflame.a")) + (install-file (string-append out + "/include/FLAME.h") + (string-append static "/include")))))))) + (inputs (list gfortran)) + (native-inputs (list lapack perl python-wrapper)) + (synopsis "High-performance library for @acronym{DLA, dense linear algebra} computations") + (description "@code{libflame} is a portable library for dense matrix computations, providing much of the functionality present in LAPACK, developed by current and former members of the @acronym{SHPC, Science of High-Performance Computing} group in the @url{https://www.ices.utexas.edu/, Institute for Computational Engineering and Sciences} at The University of Texas at Austin. @code{libflame} includes a compatibility layer, @code{lapack2flame}, which includes a complete LAPACK implementation.") - (license license:bsd-3))) + (license license:bsd-3)))) (define-public scasp (let ((commit "89a427aa04ec6346425a40111c99b310901ffe51") @@ -6555,17 +6538,15 @@ reduction.") (define-public mcrl2 (package (name "mcrl2") - (version "202206.0") + (version "202206.1") (source (origin (method url-fetch) (uri (string-append "https://www.mcrl2.org/download/release/mcrl2-" version ".tar.gz")) - (patches (search-patches "mcrl2-fix-1687.patch" - "mcrl2-fix-counterexample.patch")) (sha256 (base32 - "0alpck09pbvwk4axqmrvcjmsabsn20yayq5b3apq284n0hcbf01q")))) + "1rbfyw47bi31qla1sa4fd1npryb5kbdr0vijmdc2gg1zhpqfv0ia")))) (inputs (list boost glu mesa qtbase-5)) (build-system cmake-build-system) @@ -8456,15 +8437,15 @@ computation is supported via MPI.") (define-public scilab (package (name "scilab") - (version "5.5.0") + (version "5.5.2") (source (origin (method url-fetch) (uri - (string-append "https://oos.eu-west-2.outscale.com/scilab-releases/" + (string-append "https://www.scilab.org/download/" version "/scilab-" version "-src.tar.gz")) (sha256 - (base32 "1hx57aji5d78brwqcf8a34i1hasm3h4nw46xjg7cgxj09s8yz5kq")))) + (base32 "0phg9pn24yw98hbh475ik84dnikf1225b2knh7qbhdbdx6fm2d57")))) (build-system gnu-build-system) (native-inputs (list pkg-config gfortran)) (inputs (list libxml2 @@ -8548,6 +8529,10 @@ computation is supported via MPI.") "__threadSignal InterpReady;" "\n" "__threadSignalLock InterpReadyLock;" "\n"))) + ;; Fix CPP compilation errors. + (substitute* "modules/output_stream/src/cpp/diary_manager.cpp" + (("if \\(array_size > 0\\)") + "if (*array_size > 0)")) ;; Set SCIHOME to /tmp before macros compilation. (setenv "SCIHOME" "/tmp")))))) (home-page "https://scilab.org") |