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-rw-r--r--gnu/packages/maths.scm51
1 files changed, 51 insertions, 0 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 57d27a11d7..10b1e9be45 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -55,6 +55,7 @@
#:use-module (gnu packages gcc)
#:use-module (gnu packages gd)
#:use-module (gnu packages ghostscript)
+ #:use-module (gnu packages graphviz)
#:use-module (gnu packages gtk)
#:use-module (gnu packages image)
#:use-module (gnu packages less)
@@ -489,6 +490,56 @@ extremely large and complex data collections.")
HDF5 file is encoded according to the HDF File Format Specification.")
(license (license:x11-style "file://COPYING"))))
+(define-public netcdf
+ (package
+ (name "netcdf")
+ (version "4.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "ftp://ftp.unidata.ucar.edu/pub/netcdf/"
+ "netcdf-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0y6gdcplarwqqnrav2xg1xd6ih732rzzbmdw78v3rl5b8mwcnh0d"))
+ (patches (list (search-patch "netcdf-config-date.patch")))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("m4" ,m4)
+ ("doxygen" ,doxygen)
+ ("graphviz" ,graphviz)))
+ (inputs
+ `(("hdf5" ,hdf5)
+ ("zlib" ,zlib)))
+ (arguments
+ `(#:configure-flags '("--enable-doxygen" "--enable-dot")
+ #:parallel-tests? #f)) ;various race conditions
+ (home-page "http://www.unidata.ucar.edu/software/netcdf/")
+ (synopsis "Library for scientific data")
+ (description "NetCDF is an interface for scientific data access and a
+software library that provides an implementation of the interface. The netCDF
+library defines a machine-independent format for representing scientific data.
+Together, the interface, library, and format support the creation, access, and
+sharing of scientific data.")
+ (license (license:x11-style "file://COPYRIGHT"))))
+
+(define-public netcdf-parallel-openmpi
+ (package (inherit netcdf)
+ (name "netcdf-parallel-openmpi")
+ (inputs
+ `(("mpi" ,openmpi)
+ ,@(alist-replace "hdf5" (list hdf5-parallel-openmpi)
+ (package-inputs netcdf))))
+ ;; TODO: Replace pkg-config references in nc-config with absolute references
+ (arguments
+ (substitute-keyword-arguments (package-arguments netcdf)
+ ((#:configure-flags flags)
+ `(cons* "CC=mpicc" "CXX=mpicxx"
+ "--enable-parallel-tests"
+ ;; Shared libraries not supported with parallel IO.
+ "--disable-shared" "--with-pic"
+ ,flags))))))
+
(define-public nlopt
(package
(name "nlopt")