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'>2023-05-24gnu: python-mpi4py: Update to 3.1.4....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.1.4. Ludovic Courtès 2023-04-24gnu: openmpi: Update to 4.1.5....* gnu/packages/mpi.scm (openmpi): Update to 4.1.5. Ludovic Courtès 2023-04-07gnu: Purge pre-1.3.0 deprecated packages....* gnu/packages/bioinformatics.scm (deeptools): Remove variable. * gnu/packages/efi.scm (efi_analyzer): Ditto. * gnu/packages/guile.scm (guile-2.2/bug-fix, guile-json): Ditto. * gnu/packages/image.scm (libjpeg): Ditto. * gnu/packages/kde.scm (kdevplatform): Ditto * gnu/packages/linphone.scm (linphoneqt): Ditto. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): Ditto. * gnu/packages/mpi.scm (hwloc-2.0): Ditto. * gnu/packages/music.scm (python-abjad, zlfo): Ditto. * gnu/packages/perl.scm (perl-base, perl-parent): Ditto. * gnu/packages/tryton.scm (python-trytond): Ditto. * gnu/packages/video.scm (gnome-mpv): Ditto. * tests/graph.scm: Use guile-json-1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Bruno Victal 2023-04-07gnu: hwloc: Update to 2.9.1....* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.1. Patch to skip tests requiring /sys on non-x86 systems should not be necessary anymore, as https://github.com/open-mpi/hwloc/pull/570 has been merged in this new version. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philippe SWARTVAGHER 2023-02-27gnu: hwloc: Skip failing test on non-x86 systems....* gnu/packages/mpi.scm (hwloc-2)[arguments]<#:phases>: Rename "skip-test-that-requires-/sys" phase to "skip-tests-that-require-/sys" and expand to skip additional test requiring /sys on non-x86 systems. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Simon South 2023-02-27gnu: hwloc: Remove obsolete comments....hwloc 2.x become the default with commit 8ec7ca22d3, "gnu: hwloc: Default to 2.x.". * gnu/packages/mpi.scm (hwloc-1): Remove obsolete comment. (hwloc-2): Remove obsolete comment. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Simon South 2023-02-27gnu: Fix openmpi related packages....This makes these package definitions compatible with the openmpi package which uses gexps as of f45fc72c282bc14da7212b4acb8fe9707e53aad0. * gnu/packages/mpi.scm (openmpi-c++, java-openmpi, openmpi-thread-multiple)[arguments]: Use gexps. Christopher Baines 2023-02-23gnu: openmpi: Use gexps....* gnu/packages/mpi.scm (openmpi)[arguments]: Use gexps. Ludovic Courtès 2023-01-27gnu: hwloc: Update to 2.9.0....* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.0. [arguments]: Add 'skip-test-that-requires-/sys' phase. (%openmpi-setup): Set 'HWLOC_SYNTHETIC' environment variable. * gnu/packages/opencl.scm (pocl)[arguments]: In 'set-HOME' phase, also set 'HWLOC_SYNTHETIC'. Ludovic Courtès 2022-11-11gnu: java-openmpi: Remove unused module import....* gnu/packages/mpi.scm (java-openmpi)[arguments]: Don't import (guix build syscalls). Marius Bakke 2022-10-31gnu: Fix various lint issues in synopsis and descriptions....* gnu/packages/android.scm (etc1tool)[synopsis]: Drop trailing period. * gnu/packages/bioinformatics.scm (mudskipper)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-async-log-attributes-1)[synopsis]: Likewise. (rust-atomic-polyfill-1)[synopsis]: Likewise. (rust-modifier-0.1)[synopsis]: Likewise. (rust-openssl-macros-0.1)[synopsis]: Likewise. (rust-syn-mid-0.5)[synopsis]: Likewise. (rust-toml-edit-0.14)[synopsis]: Likewise. (rust-valuable-derive-0.1)[synopsis]: Likewise. (rust-inflections-1)[synopsis]: Likewise. * gnu/packages/databases.scm (python-databases)[synopsis]: Likewise. * gnu/packages/games.scm (liquidwar6)[synopsis]: Likewise. * gnu/packages/golang.scm (go-golang.org-x-sync-errgroup)[synopsis]: Likewise. * gnu/packages/guile-xyz.scm (guile-config)[synopsis]: Likewise. * gnu/packages/haskell-web.scm (ghc-hxt-xpath)[synopsis]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-string-qq)[synopsis]: Likewise. * gnu/packages/machine-learning.scm (python-lap)[synopsis]: Likewise. (python-pyro-api)[synopsis]: Likewise. * gnu/packages/messaging.scm (python-librecaptcha)[synopsis]: Likewise. * gnu/packages/python-check.scm (python-pytest-cram)[synopsis]: Likewise. * gnu/packages/python-web.scm (python-jschema-to-python)[synopsis]: Likewise. (python-sarif-om)[synopsis]: Likewise. (python-socksio)[synopsis]: Likewise. (python-msrest)[synopsis]: Likewise. * gnu/packages/tor.scm (torsocks)[synopsis]: Likewise. * gnu/packages/cran.scm (r-rlist)[synopsis]: Remove leading article. * gnu/packages/crates-io.scm (rust-clippy-lints-0.0.153)[synopsis]: Likewise. (rust-simplelog-0.11)[synopsis]: Likewise. * gnu/packages/samba.scm (wsdd)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-spki-0.4)[synopsis]: Remove trailing whitespace. * gnu/packages/golang.scm (go-github-com-mattn-go-zglob)[description]: Remove leading whitespace. * gnu/packages/haskell-check.scm (ghc-crypto-cipher-tests)[description]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-ctype)[synopsis]: Remove trailing whitespace. * gnu/packages/mpi.scm (openmpi-thread-multiple)[description]: Remove leading whitespace. * gnu/packages/node-xyz.scm (node-string-decoder)[synopsis]: Remove trailing whitespace. Vagrant Cascadian 2022-07-12gnu: openmpi: Only build with valgrind on supported systems....* gnu/packages/mpi.scm (openmpi)[inputs]: Wrap valgrind in if-supported macro. [arguments]: Adjust configure-flags based on if valgrind is present. Efraim Flashner 2022-07-06gnu: hwloc: Update to 2.8.0...* gnu/packages/mpi.scm (hwloc): Update to 2.8.0 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Philippe SWARTVAGHER 2022-06-05gnu: openmpi: Update to 4.1.4....* gnu/packages/mpi.scm (openmpi): Update to 4.1.4. Tobias Geerinckx-Rice 2022-04-11gnu: openmpi: Remove trailing #t....* gnu/packages/mpi.scm (openmpi)[arguments]: Remove trailing #t. Ludovic Courtès 2022-04-11gnu: openmpi: Update to 4.1.3....* gnu/packages/mpi.scm (openmpi): Update to 4.1.3. Ludovic Courtès 2022-04-11gnu: openmpi: Remove input labels....* gnu/packages/mpi.scm (openmpi)[inputs]: Remove input labels. Ludovic Courtès 2022-04-11gnu: hwloc: Remove trailing #t....* gnu/packages/mpi.scm (hwloc-1)[arguments]: Remove trailing #t. (hwloc-2)[arguments]: Likewise. Ludovic Courtès 2022-04-11gnu: hwloc@1: Use 'target-arm32?' in conditional....Suggested by Maxime Devos. * gnu/packages/mpi.scm (hwloc-1)[inputs]: Use 'target-arm32?' rather than custom code. Ludovic Courtès 2022-04-11gnu: hwloc: Remove input labels....* gnu/packages/mpi.scm (hwloc-1)[inputs]: Remove labels. (hwloc-2)[inputs]: Use 'modify-inputs'. Ludovic Courtès 2022-04-11gnu: hwloc@1: Update to 1.11.13....* gnu/packages/patches/hwloc-1-test-btrfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mpi.scm (hwloc-1): Use it and update to 1.11.13. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Philippe SWARTVAGHER 2022-03-29gnu: openmpi: Update to 4.1.2...* gnu/packages/mpi.scm (openmpi): Update to 4.1.2 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philippe SWARTVAGHER 2022-03-25gnu: hwloc: Update to 2.7.1....* gnu/packages/mpi.scm (hwloc-2): Update to 2.7.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philippe SWARTVAGHER 2022-01-17gnu: mpich: Remove input labels and trailing #t in phases....* gnu/packages/mpi.scm (mpich)[inputs]: Remove labels. [arguments]: Remove trailing #t from phases. Ludovic Courtès 2022-01-17gnu: mpich: Allow compilation with GCC 10....Fixes <https://issues.guix.gnu.org/53320> Reported by Clément Barthelemy <clement.barthelemy@inria.fr>. * gnu/packages/mpi.scm (mpich)[arguments]: Add 'define-gfortran-wrapper' phase. Ludovic Courtès 2021-12-17gnu: hwloc: Update to 2.7.0....* gnu/packages/mpi.scm (hwloc-2): Update to 2.7.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Philippe SWARTVAGHER 2021-12-13gnu: Simplify package inputs....This commit was obtained by running: ./pre-inst-env guix style without any additional argument. Ludovic Courtès 2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus 2021-12-02gnu: Add openmpi-c++....* gnu/packages/mpi.scm (openmpi-c++): New variable. Ricardo Wurmus