diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 108 |
1 files changed, 54 insertions, 54 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c7a81b96eb..c80e98134a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -534,7 +534,7 @@ by Luis Torgo, published by CRC Press.") "05mv6xhm15b0mq9kzyiblkb14bdqmjrwl64ghdk66il0w8i7p6nh")))) (properties `((upstream-name . "emdist"))) (build-system r-build-system) - (home-page "http://www.rforge.net/emd") + (home-page "https://www.rforge.net/emd") (synopsis "Earth mover's distance") (description "This package provides tools to calculate the Earth Mover's @@ -919,7 +919,7 @@ can read and write both the metadata and the cell data in a Sheet.") (build-system r-build-system) (inputs (list proj-7 zlib)) (native-inputs (list pkg-config)) - (home-page "http://www.rforge.net/proj4/") + (home-page "https://www.rforge.net/proj4/") (synopsis "Simple interface to the PROJ.4 cartographic projections library") (description "This package provides a simple interface to lat/long projection and @@ -1484,7 +1484,7 @@ proposals for count data.") (build-system r-build-system) (propagated-inputs (list r-lattice)) - (home-page "http://zoo.R-Forge.R-project.org/") + (home-page "https://zoo.R-Forge.R-project.org/") (synopsis "S3 infrastructure for regular and irregular time series") (description "This package contains an S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time @@ -1584,7 +1584,7 @@ in good performances with large files.") r-tidyselect)) (native-inputs (list r-knitr)) - (home-page "http://corybrunson.github.io/ggalluvial/") + (home-page "https://corybrunson.github.io/ggalluvial/") (synopsis "Alluvial plots for ggplot2") (description "This package provides alluvial plots for @code{ggplot2}. Alluvial plots use variable-width ribbons and stacked bar plots to represent @@ -1972,7 +1972,7 @@ higher.") (properties `((upstream-name . "OrgMassSpecR"))) (build-system r-build-system) (native-inputs (list r-knitr)) - (home-page "http://OrgMassSpec.github.io/") + (home-page "https://OrgMassSpec.github.io/") (synopsis "Organic or biological mass spectrometry data analysis") (description "This package @code{OrgMassSpecR} is an extension of the @code{R} @@ -2194,7 +2194,7 @@ with default R plot functions.") (list r-colorspace r-scatterplot3d)) (native-inputs (list r-knitr)) - (home-page "http://oompa.r-forge.r-project.org/") + (home-page "https://oompa.r-forge.r-project.org/") (synopsis "Qualitative palettes with many colors") (description "This package provides tools for creating, viewing, and assessing @@ -4768,7 +4768,7 @@ initiative to bring PASSTEC 2000 functionalities to R.") r-mvtnorm r-rpart r-survival)) - (home-page "http://partykit.R-Forge.R-project.org/partykit") + (home-page "https://partykit.R-Forge.R-project.org/partykit") (synopsis "Toolkit for recursive partytioning") (description "This package provides a toolkit with infrastructure for representing, @@ -4937,7 +4937,7 @@ value for each cluster in a dendrogram.") (sha256 (base32 "0inmnmi0pqmbqnl00d5yal1bmd7awigxd7sgzjsil9c1k55f4r8y")))) (build-system r-build-system) - (home-page "http://www.rcpp.org") + (home-page "https://www.rcpp.org") (synopsis "Seamless R and C++ integration") (description "The Rcpp package provides R functions as well as C++ classes which offer @@ -5370,7 +5370,7 @@ any subsequent lookup as it keeps the hash table in memory.") "0krwxq4985x3n5mzx8i9smwpkd5sifbfgy9z7ikwk84734km683j")))) (build-system r-build-system) (propagated-inputs (list r-bit)) - (home-page "http://ff.r-forge.r-project.org/") + (home-page "https://ff.r-forge.r-project.org/") (synopsis "Memory-efficient storage of large data on disk and access functions") (description "This package provides data structures that are stored on disk but @@ -6046,7 +6046,7 @@ classes in the @code{stats4} package.") (build-system r-build-system) (propagated-inputs (list r-bbmle r-coda r-lattice r-mass r-plyr)) - (home-page "http://www.math.mcmaster.ca/bolker/emdbook") + (home-page "https://www.math.mcmaster.ca/bolker/emdbook") (synopsis "Support functions and data for \"Ecological Models and Data\"") (description "This package provides auxiliary functions and data sets for \"Ecological @@ -6125,7 +6125,7 @@ functions from LINPACK.") (list r-mass r-survival)) (native-inputs (list r-knitr)) - (home-page "http://riskassessment.r-forge.r-project.org") + (home-page "https://riskassessment.r-forge.r-project.org") (synopsis "Fitting a parametric distribution from data") (description "This package extends the @code{fitdistr} function of the MASS package @@ -6591,7 +6591,7 @@ interface to @code{PostgreSQL}, a relational database.") "1d34m2nyk7m6j2dci69bhy5mlw479xax1517j7f14pq7vhpsm9l1")))) (build-system r-build-system) (propagated-inputs (list r-lpsolve)) - (home-page "http://linprog.r-forge.r-project.org/") + (home-page "https://linprog.r-forge.r-project.org/") (synopsis "Linear programming and optimization") (description "This package can be used to solve Linear Programming / Linear @@ -6612,7 +6612,7 @@ Optimization problems by using the simplex algorithm.") (build-system r-build-system) (propagated-inputs (list r-magic r-linprog r-lpsolve r-rcpp r-rcppprogress)) - (home-page "http://geometry.r-forge.r-project.org/") + (home-page "https://geometry.r-forge.r-project.org/") (synopsis "Mesh generator and surface tessellator") (description "This package makes the qhull library available in R, in a similar manner @@ -7644,7 +7644,7 @@ phylogenies and ancestral character states.") "0vc2is1hf1g0sw92kzl8mddck264qwiqgm5q2wkcwwz65fss7mkf")))) (build-system r-build-system) (propagated-inputs (list r-proxy)) - (home-page "http://dtw.r-forge.r-project.org/") + (home-page "https://dtw.r-forge.r-project.org/") (synopsis "Dynamic Time Warping Algorithms") (description "This package provides a comprehensive implementation of @dfn{dynamic time warping} (DTW) algorithms in R. DTW computes the @@ -10280,7 +10280,7 @@ stored data and compression with the LZ4 and ZSTD compressors.") (properties `((upstream-name . "fst"))) (build-system r-build-system) (propagated-inputs (list r-fstcore r-rcpp)) - (home-page "http://www.fstpackage.org") + (home-page "https://www.fstpackage.org") (synopsis "Fast serialization of data frames") (description "The fst package for R provides a fast, easy and flexible way to @@ -11359,7 +11359,7 @@ functions.") (list jags)) (native-inputs (list pkg-config)) - (home-page "http://mcmc-jags.sourceforge.net") + (home-page "https://mcmc-jags.sourceforge.net") (synopsis "Bayesian graphical models using MCMC") (description "This package provides an R interface to the JAGS MCMC library. JAGS is @@ -12480,7 +12480,7 @@ through permutation testing.") (list r-igraph r-network)) (native-inputs (list r-knitr)) - (home-page "http://mbojan.github.io/intergraph") + (home-page "https://mbojan.github.io/intergraph") (synopsis "Coercion routines for network data objects") (description "Functions implemented in this package allow coercing (i.e. convert) @@ -12830,7 +12830,7 @@ data with multiple data types.") (build-system r-build-system) (propagated-inputs (list r-kernsmooth)) - (home-page "http://qualV.R-Forge.R-Project.org/") + (home-page "https://qualV.R-Forge.R-Project.org/") (synopsis "Qualitative Validation Methods") (description "This package provides qualitative methods for the validation of dynamic @@ -12891,7 +12891,7 @@ subsequence} (LCS) using a dynamic programming algorithm.") r-vctrs)) (native-inputs (list r-knitr)) - (home-page "http://larmarange.github.io/labelled/") + (home-page "https://larmarange.github.io/labelled/") (synopsis "Manipulating labelled data") (description "This package provides useful functions to deal with the @@ -13608,7 +13608,7 @@ console, resulting in an interactive editing environment.") r-mitools r-numderiv r-survival)) - (home-page "http://r-survey.r-forge.r-project.org/survey/") + (home-page "https://r-survey.r-forge.r-project.org/survey/") (synopsis "Analysis of complex survey samples") (description "This package provides tools for the analysis of complex survey samples. @@ -14109,7 +14109,7 @@ and permutation inference in the framework of Strasser and Weber (1999).") r-multcomp r-mvtnorm r-survival)) - (home-page "http://coin.r-forge.r-project.org") + (home-page "https://coin.r-forge.r-project.org") (synopsis "Conditional inference procedures in a permutation test framework") (description "This package provides conditional inference procedures for the general @@ -15747,7 +15747,7 @@ al. (2010) <DOI:10.1016/j.neuroimage.2010.04.241>, Tabelow and Polzehl (2011) (base32 "082qj08kzyzwvjacwq0sl3xxdx6iz5hgx6q24jv1mnvx7z5xn5ry")))) (build-system r-build-system) - (home-page "http://minato.sip21c.org/msb/") + (home-page "https://minato.sip21c.org/msb/") (synopsis "Functions for medical statistics book with demographic data") (description "This package provides several utility functions for the book entitled @@ -16050,7 +16050,7 @@ Processing.") (build-system r-build-system) (propagated-inputs (list r-bh r-nlp r-rcpp r-slam r-xml2)) - (home-page "http://tm.r-forge.r-project.org/") + (home-page "https://tm.r-forge.r-project.org/") (synopsis "Text mining package") (description "This package provides a framework for text mining applications within R.") @@ -16411,7 +16411,7 @@ structure of any data type.") (base32 "028fw61n61i79fhnaqx7gmdifdpbvp3yiaq9vvfrbv4k7i84r83i")))) (build-system r-build-system) - (home-page "http://strimmerlab.org/software/corpcor/") + (home-page "https://strimmerlab.org/software/corpcor/") (synopsis "Efficient estimation of covariance and (partial) correlation") (description "This package implements a James-Stein-type shrinkage estimator for the @@ -17177,7 +17177,7 @@ limitations\" using the GNU Multiple Precision library.") (list r-gmp)) (native-inputs (list pkg-config)) - (home-page "http://rmpfr.r-forge.r-project.org/") + (home-page "https://rmpfr.r-forge.r-project.org/") (synopsis "R bindings to the MPFR library") (description "This package supports arithmetic (via S4 classes and methods) for @@ -17708,7 +17708,7 @@ covariance functions for large data sets.") (build-system r-build-system) (propagated-inputs (list r-fields r-maps)) - (home-page "http://spatialextremes.r-forge.r-project.org/") + (home-page "https://spatialextremes.r-forge.r-project.org/") (synopsis "Modelling spatial extremes") (description "This package provides tools for the statistical modelling of spatial @@ -17902,7 +17902,7 @@ covariates of each feature, making the downstream analysis easy.") "046w3xbr535c5jyd68adv42a7limxp1mv57b5w6w673w707lmw2p")))) (build-system r-build-system) (propagated-inputs (list r-corpcor)) - (home-page "http://strimmerlab.org/software/longitudinal/") + (home-page "https://strimmerlab.org/software/longitudinal/") (synopsis "Analysis of multiple time course data") (description "This package contains general data structures and functions for @@ -17926,7 +17926,7 @@ dynamical correlation and dynamical covariance.") (build-system r-build-system) (propagated-inputs (list r-corpcor r-fdrtool r-longitudinal)) - (home-page "http://strimmerlab.org/software/genenet/") + (home-page "https://strimmerlab.org/software/genenet/") (synopsis "Modeling and inferring gene networks") (description "This package analyzes gene expression (time series) data with focus on @@ -18720,7 +18720,7 @@ identifying outliers.") (propagated-inputs (list r-rcpp r-rcpparmadillo)) (native-inputs (list r-knitr)) - (home-page "http://www.perossi.org/home/bsm-1") + (home-page "https://www.perossi.org/home/bsm-1") (synopsis "Bayesian inference for marketing/micro-econometrics") (description "This package covers many important models used in marketing and @@ -19787,7 +19787,7 @@ barplots or heatmaps.") (list r-ade4 r-segmented)) (inputs (list zlib)) - (home-page "http://seqinr.r-forge.r-project.org/") + (home-page "https://seqinr.r-forge.r-project.org/") (synopsis "Biological sequences retrieval and analysis") (description "This package provides tools for exploratory data analysis and data @@ -21573,7 +21573,7 @@ repository.") (build-system r-build-system) (propagated-inputs (list r-kernsmooth r-mass)) - (home-page "http://mpm.r-forge.r-project.org") + (home-page "https://mpm.r-forge.r-project.org") (synopsis "Multivariate projection methods") (description "This is a package for exploratory graphical analysis of multivariate @@ -22212,7 +22212,7 @@ Row} (CSR) format.") r-stringi)) (native-inputs (list r-knitr)) - (home-page "http://text2vec.org") + (home-page "https://text2vec.org") (synopsis "Text mining framework for R") (description "This package provides fast and memory-friendly tools for text @@ -23594,7 +23594,7 @@ effect size.") (list r-sp)) (native-inputs (list pkg-config r-knitr)) - (home-page "http://rgdal.r-forge.r-project.org") + (home-page "https://rgdal.r-forge.r-project.org") (synopsis "Bindings for the Geospatial Data Abstraction Library") (description "This package provides bindings to the Geospatial Data Abstraction @@ -25276,7 +25276,7 @@ transcription, ...") (list libsndfile)) (propagated-inputs (list r-tuner)) - (home-page "http://rug.mnhn.fr/seewave") + (home-page "https://rug.mnhn.fr/seewave") (synopsis "Sound analysis and synthesis") (description "This package provides functions for analysing, manipulating, displaying, @@ -25846,7 +25846,7 @@ R.") r-locfit r-rcolorbrewer)) (native-inputs (list gfortran)) - (home-page "http://pkg.robjhyndman.com/hdrcde") + (home-page "https://pkg.robjhyndman.com/hdrcde") (synopsis "Highest density regions and conditional density estimation") (description "This is a package for the computation of highest density regions in one @@ -26632,7 +26632,7 @@ different conceptual parts of the algorithm.") (build-system r-build-system) (propagated-inputs (list r-mass r-minpack-lm r-rgl r-scatterplot3d)) - (home-page "http://www.maths.nottingham.ac.uk/~ild/shapes") + (home-page "https://www.maths.nottingham.ac.uk/~ild/shapes") (synopsis "Statistical shape analysis") (description "This package provides routines for the statistical analysis of landmark @@ -26748,7 +26748,7 @@ statistical shape analysis and archetypal analysis.") (propagated-inputs (list r-bh r-rcpp)) - (home-page "http://dirk.eddelbuettel.com/code/anytime.html") + (home-page "https://dirk.eddelbuettel.com/code/anytime.html") (synopsis "Converter of input to POSIXct or Date") (description "The package converts the input in any one of character, integer, numeric, @@ -27689,7 +27689,7 @@ Gibbs sampling by Xuan-Hieu Phan and co-authors.") r-rcpparmadillo r-slam r-stringr)) - (home-page "http://www.structuraltopicmodel.com/") + (home-page "https://www.structuraltopicmodel.com/") (synopsis "Estimation of the Structural Topic Model") (description "The @dfn{Structural Topic Model} (STM) allows researchers to estimate @@ -28196,7 +28196,7 @@ model objects and help reduce the size of model objects saved to disk.") (build-system r-build-system) (propagated-inputs (list r-plyr r-rjson r-whisker)) - (home-page "http://christophergandrud.github.io/d3Network/") + (home-page "https://christophergandrud.github.io/d3Network/") (synopsis "Create D3 JavaScript network, tree, dendrogram, and Sankey graphs") (description "This package is intended to make it easy to create D3 JavaScript @@ -28329,7 +28329,7 @@ well as Ravand and Robitzsch (2015).") (build-system r-build-system) (propagated-inputs (list r-cdm r-rcpp r-rcpparmadillo)) - (home-page "http://www.edmeasurementsurveys.com/TAM/Tutorials/") + (home-page "https://www.edmeasurementsurveys.com/TAM/Tutorials/") (synopsis "Test analysis modules") (description "This package includes tools for marginal maximum likelihood estimation @@ -29942,7 +29942,7 @@ permuted copies (shadows).") (list r-quadprog)) (native-inputs (list r-knitr)) - (home-page "http://directlabels.r-forge.r-project.org/") + (home-page "https://directlabels.r-forge.r-project.org/") (synopsis "Direct labels for multicolor plots") (description "This package provides an extensible framework for automatically placing @@ -30543,7 +30543,7 @@ Kolmogorov-Smirnov, ANOVA) are also supported.") (properties `((upstream-name . "spatstat.utils"))) (build-system r-build-system) - (home-page "http://www.spatstat.org") + (home-page "https://www.spatstat.org") (synopsis "Utility functions for spatstat") (description "This package contains utility functions for the @code{spatstat} package @@ -30566,7 +30566,7 @@ which may also be useful for other purposes.") (build-system r-build-system) (propagated-inputs (list r-abind r-matrix r-spatstat-utils r-tensor)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Sparse three-dimensional arrays and linear algebra utilities") (description "This package defines sparse three-dimensional arrays and supports @@ -30589,7 +30589,7 @@ matrix calculations that are common in statistics, such as quadratic forms.") (build-system r-build-system) (propagated-inputs (list r-matrix r-spatstat-utils)) - (home-page "http://www.spatstat.org") + (home-page "https://www.spatstat.org") (synopsis "Datasets for spatstat") (description "This package contains all the datasets for the @code{spatstat} @@ -30611,7 +30611,7 @@ package.") (build-system r-build-system) (propagated-inputs (list r-deldir r-polyclip r-spatstat-data r-spatstat-utils)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Geometrical functionality of the spatstat package") (description "This is a subset of the original spatstat package, containing the @@ -30645,7 +30645,7 @@ for the geometry of linear networks.") r-spatstat-sparse r-spatstat-utils r-tensor)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Core functionality of the spatstat package") (description "This is a subset of the original spatstat package, containing all of the @@ -30675,7 +30675,7 @@ user-level code from spatstat, except for the code for linear networks.") r-spatstat-random r-spatstat-sparse r-spatstat-utils)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Linear networks functionality of the spatstat package") (description "This is a subset of the spatstat package, containing its functionality @@ -30695,7 +30695,7 @@ for spatial data on a linear network.") (properties `((upstream-name . "spatstat.random"))) (build-system r-build-system) (propagated-inputs (list r-spatstat-data r-spatstat-geom r-spatstat-utils)) - (home-page "http://spatstat.org/") + (home-page "https://spatstat.org/") (synopsis "Random Generation Functionality for the 'spatstat' Family") (description "This package provides functionality for random generation of spatial @@ -30727,7 +30727,7 @@ sampler).") (list r-spatstat-data r-spatstat-explore r-spatstat-geom r-spatstat-linnet r-spatstat-model r-spatstat-random r-spatstat-utils)) - (home-page "http://www.spatstat.org") + (home-page "https://www.spatstat.org") (synopsis "Spatial Point Pattern analysis, model-fitting, simulation, tests") (description "This package provides a comprehensive toolbox for analysing Spatial @@ -30803,7 +30803,7 @@ semantics and supports interaction with @code{ALTREP} vectors.") (properties `((upstream-name . "RcppTOML"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) - (home-page "http://dirk.eddelbuettel.com/code/rcpp.toml.html") + (home-page "https://dirk.eddelbuettel.com/code/rcpp.toml.html") (synopsis "Rcpp bindings to TOML parser") (description "The TOML configuration format specifies an excellent format suitable for @@ -32468,7 +32468,7 @@ this variability problem can be overcome.") "1kdnm5ilfn5fclry3f1d518761hykrqgjhv69kc881r2fpcfa1lv")))) (properties `((upstream-name . "MLEcens"))) (build-system r-build-system) - (home-page "http://stat.ethz.ch/~maathuis/") + (home-page "https://stat.ethz.ch/~maathuis/") (synopsis "Computation of the MLE for bivariate (interval) censored data") (description "This package contains functions to compute the nonparametric @@ -32786,7 +32786,7 @@ other R users.") r-spatstat-geom r-tibble r-uwot)) - (home-page "http://www.satijalab.org/seurat") + (home-page "https://www.satijalab.org/seurat") (synopsis "Seurat is an R toolkit for single cell genomics") (description "This package is an R package designed for QC, analysis, and @@ -36132,7 +36132,7 @@ large datasets.") r-mass r-nnet r-randomforest)) - (home-page "http://www.sciviews.org/zooimage") + (home-page "https://www.sciviews.org/zooimage") (synopsis "Machine learning algorithms with unified interface") (description "This package provides a unified interface to various machine learning @@ -36165,7 +36165,7 @@ algorithms. Confusion matrices are provided too.") r-svdialogs r-svmisc r-tiff)) - (home-page "http://www.sciviews.org/zooimage") + (home-page "https://www.sciviews.org/zooimage") (synopsis "Analysis of numerical plankton images") (description "This package provides a solution for analyzing digital images of |