diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 70abdae0f0..8cdce01e73 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -538,6 +538,46 @@ BED, GFF/GTF, VCF.") and utilities for PacBio C++ applications.") (license license:bsd-3))) +(define-public r-bedtorch + (let ((commit "f5ff4f83b94f59eac660333c64e4b2f296b35cea") + (revision "1")) + (package + (name "r-bedtorch") + (version (git-version "0.1.12.12" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/haizi-zh/bedtorch/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "08l04iqf54b5995gc7rvqqd7w327fwqs7qjyhc9y5cqfj8yv4c48")))) + (properties `((upstream-name . "bedtorch"))) + (build-system r-build-system) + (propagated-inputs + (list r-assertthat + r-curl + r-data-table + r-dplyr + r-genomeinfodb + r-genomicranges + r-purrr + r-r-utils + r-rcpp + r-rcurl + r-readr + r-rhtslib12 + r-s4vectors + r-stringr + r-tidyr)) + (home-page "https://github.com/haizi-zh/bedtorch/") + (synopsis "R package for fast BED-file manipulation") + (description + "The goal of bedtorch is to provide a fast BED file manipulation tool +suite native in R.") + (license license:expat)))) + (define-public r-btools (let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5") (revision "1")) |