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-rw-r--r--gnu/packages/bioinformatics.scm7
1 files changed, 6 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 245e7dd564..73cca16717 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10,6 +10,7 @@
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
+;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -3240,12 +3241,16 @@ VCF.")
(msg (format #f
"\
Class-Path: /~a \
- ~a/share/java/htsjdk.jar${line.separator}"
+ ~a/share/java/htsjdk.jar${line.separator}${line.separator}"
;; maximum line length is 70
(string-tabulate (const #\b) 57)
(assoc-ref inputs "java-htsjdk"))))
(if (member "manifest" name)
`(,tag ,@kids
+ (replaceregexp
+ (@ (file "${manifest.file}")
+ (match "\\r\\n\\r\\n")
+ (replace "${line.separator}")))
(echo
(@ (message ,msg)
(file "${manifest.file}")