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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b2c4f98531..70abdae0f0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -574,6 +574,33 @@ and utilities for PacBio C++ applications.") for all types of microbial diversity analyses.") (license license:expat)))) +(define-public r-rhtslib12 + (let ((commit "ee186daf04876969c7f31c16a0e0fda8e7c16a30") + (revision "1")) + (package + (name "r-rhtslib12") + (version (git-version "1.23.2" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/haizi-zh/Rhtslib12") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0a3kkp0phi2fq6ip8p9vfj3axn7l15f2mb51a6v3ai4nlkhqqawj")))) + (properties `((upstream-name . "Rhtslib12"))) + (build-system r-build-system) + (propagated-inputs (list curl zlib r-zlibbioc)) + (native-inputs (list pkg-config r-knitr)) + (home-page "https://github.com/haizi-zh/Rhtslib12") + (synopsis "HTSlib high-throughput sequencing library as an R package") + (description + "This package provides version 1.12 of the HTSlib C library for +high-throughput sequence analysis. The package is primarily useful to +developers of other R packages who wish to make use of HTSlib.") + (license license:lgpl2.0+)))) + (define-public pbbam (package (name "pbbam") |