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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 42d1c3efb3..bf1bae1254 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12902,6 +12902,30 @@ scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.") (license license:gpl2))) +(define-public r-maftools + (package + (name "r-maftools") + (version "2.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "maftools" version)) + (sha256 + (base32 "1s8w3xwwigz803l81bs9cb2dbvvw5r9z8jjcav1rmh9wm8909nfd")))) + (properties `((upstream-name . "maftools"))) + (build-system r-build-system) + (propagated-inputs + (list r-data-table r-rcolorbrewer r-rhtslib r-survival r-zlibbioc)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/PoisonAlien/maftools") + (synopsis "Summarize, analyze and visualize MAF files") + (description + "Analyze and visualize Mutation Annotation Format (MAF) files from large +scale sequencing studies. This package provides various functions to perform +most commonly used analyses in cancer genomics and to create feature rich +customizable visualzations with minimal effort.") + (license license:expat))) + (define-public r-motifmatchr (package (name "r-motifmatchr") |