diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 321a9621f1..6ec177d222 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3323,6 +3323,32 @@ different constituting cell types and predicted cell type proportions of single expression profiles.") (license license:gpl2))) +(define-public r-decontam + (package + (name "r-decontam") + (version "1.16.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "decontam" version)) + (sha256 + (base32 + "1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9")))) + (properties `((upstream-name . "decontam"))) + (build-system r-build-system) + (propagated-inputs + (list r-ggplot2 r-reshape2)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/benjjneb/decontam") + (synopsis + "Identification of contaminants in marker-gene and metagenomics data") + (description + "This package offers simple statistical identification of contaminating +sequence features in marker-gene or metagenomics data. It works on any kind +of feature derived from environmental sequencing data (e.g. ASVs, OTUs, +taxonomic groups, MAGs, etc). Requires DNA quantitation data or sequenced +negative control samples.") + (license license:artistic2.0))) + (define-public r-deconvr (package (name "r-deconvr") |