diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 49 |
1 files changed, 48 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 37ac94128b..20aabb0be4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2018, 2019 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2018 Roel Janssen <roel@gnu.org> +;;; Copyright © 2017, 2018 Roel Janssen <roel@gnu.org> ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. @@ -228,6 +228,53 @@ database is exposed as a @code{TxDb} object.") (license license:artistic2.0))) +(define-public r-biocgenerics + (package + (name "r-biocgenerics") + (version "0.28.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BiocGenerics" version)) + (sha256 + (base32 + "0cvpsrhg7sn7lpqgxvqrsagv6j7xj5rafq5xdjfd8zc4gxrs5rb8")))) + (properties + `((upstream-name . "BiocGenerics"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/BiocGenerics") + (synopsis "S4 generic functions for Bioconductor") + (description + "This package provides S4 generic functions needed by many Bioconductor +packages.") + (license license:artistic2.0))) + +(define-public r-annotate + (package + (name "r-annotate") + (version "1.60.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "annotate" version)) + (sha256 + (base32 + "0p6c96lay23a67dyirgnwzm2yw22m592z780vy6p4nqwla8ha18n")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-dbi" ,r-dbi) + ("r-rcurl" ,r-rcurl) + ("r-xml" ,r-xml) + ("r-xtable" ,r-xtable))) + (home-page + "https://bioconductor.org/packages/annotate") + (synopsis "Annotation for microarrays") + (description "This package provides R environments for the annotation of +microarrays.") + (license license:artistic2.0))) + (define-public r-hpar (package (name "r-hpar") |