diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 31 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f557dce8e5..09581d9fde 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,5 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2018 Roel Janssen <roel@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -21,7 +22,9 @@ #:use-module (guix packages) #:use-module (guix download) #:use-module (guix build-system r) - #:use-module (gnu packages)) + #:use-module (gnu packages) + #:use-module (gnu packages statistics) + #:use-module (gnu packages bioinformatics)) (define-public r-hpar (package @@ -40,3 +43,30 @@ (description "This package provides a simple interface to and data from the Human Protein Atlas project.") (license license:artistic2.0))) + +(define-public r-regioner + (package + (name "r-regioner") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "regioneR" version)) + (sha256 + (base32 + "1vprp3l929hwzmvgskbhawfgnrymwc9n2rxd16rgagnv1dxnjxfp")))) + (properties `((upstream-name . "regioneR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-memoise" ,r-memoise) + ("r-genomicranges" ,r-genomicranges) + ("r-bsgenome" ,r-bsgenome) + ("r-rtracklayer" ,r-rtracklayer) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-iranges" ,r-iranges))) + (home-page "https://bioconductor.org/packages/regioneR/") + (synopsis "Association analysis of genomic regions") + (description "This package offers a statistical framework based on +customizable permutation tests to assess the association between genomic +region sets and other genomic features.") + (license license:artistic2.0))) |