diff options
Diffstat (limited to 'gnu/packages/astronomy.scm')
| -rw-r--r-- | gnu/packages/astronomy.scm | 407 |
1 files changed, 219 insertions, 188 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 908c3ada3a..c063285b52 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -589,13 +589,13 @@ mining in astronomy.") (define-public python-fitsio (package (name "python-fitsio") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (pypi-uri "fitsio" version)) (sha256 - (base32 "04fbg1ffj7qrlzw50xzzkfnlk6qjjqq96j0im7phprmwb1rbvzzh")) + (base32 "19him5rcpjyz14ghkmifnd1xl3ivlyy84h45k6j2pyr5ixc60ky6")) (modules '((guix build utils))) (snippet ;; Remove the bundled cfitsio. When update the package check the @@ -703,7 +703,7 @@ for reading and writing.") (define-public erfa (package (name "erfa") - (version "2.0.0") + (version "2.0.1") (source (origin (method git-fetch) @@ -712,7 +712,7 @@ for reading and writing.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0s9dpj0jdkqcg552f00jhd722czji4pffabmpys5pgi6djckq4f4")))) + (base32 "1hxjbcvdlq4871r17fphbaf3bd8dsjagp1rdb3j8v6kr4f1dil9n")))) (build-system gnu-build-system) (native-inputs (list automake autoconf libtool pkg-config)) @@ -923,7 +923,7 @@ astronomical image-processing packages like Drizzle, Swarp or SExtractor.") libtirpc qtbase-5 zlib)) - (home-page "https://projets.lam.fr/projects/unsio/wiki") + (home-page "https://projets.lam.fr/projects/glnemo2/wiki/Wiki") (synopsis "3D interactive visualization program for n-body like particles") (description "GLNEMO2 is an interactive 3D visualization program which displays @@ -1121,7 +1121,7 @@ image formats.") (define-public splash (package (name "splash") - (version "3.8.4") + (version "3.9.0") (source (origin (method git-fetch) (uri (git-reference @@ -1129,7 +1129,7 @@ image formats.") (commit (string-append "v" version)))) (sha256 (base32 - "1l18sqz5mpab9wb5hlbfy18wfwq6fpijc3p9wa5bv6lrcymvpirp")) + "19r5j4jrxhp3gf865ns59vvfnn5a303dqgmb8y2kgcsx26fci1hs")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (arguments @@ -1385,7 +1385,7 @@ any arbitrary astrometric projection defined in the WCS standard.") (define-public celestia (package (name "celestia") - (version "1.6.3") + (version "1.6.4") (source (origin (method git-fetch) @@ -1394,7 +1394,7 @@ any arbitrary astrometric projection defined in the WCS standard.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0dzci5n7gcnm1vq916gsn9zddkhbzhbsakqxrpnmvzibsqznn6c8")))) + (base32 "0nz9k5nd2zmrbwj1qhsfwmvqymqk8c4yjxpybck44isrild2ah9j")))) (build-system gnu-build-system) (arguments (list @@ -1466,13 +1466,13 @@ accurately in real time at any rate desired.") (define-public python-astropy (package (name "python-astropy") - (version "5.3.3") + (version "5.3.4") (source (origin (method url-fetch) (uri (pypi-uri "astropy" version)) (sha256 - (base32 "1fwk7x4q1hgdf9m8q613c6q7045sam1g934vgqv588ksbngxyc03")) + (base32 "1n7iwvjari4xv37094cpiapmjhhm57b04hi4r40wqb5czbigg46l")) (modules '((guix build utils))) (snippet '(begin @@ -1527,7 +1527,9 @@ accurately in real time at any rate desired.") "not remote_data" ;; XXX: Check why this tests failing. " and not test_ignore_sigint" - " and not test_parquet_filter")))))))) + " and not test_parquet_filter" + ;; See https://github.com/astropy/astropy/issues/15537 + " and not test_pvstar")))))))) (native-inputs (list pkg-config python-colorlog @@ -1612,19 +1614,27 @@ astronomy and astrophysics.") (uri (pypi-uri "astroquery" version)) (sha256 (base32 "1vhkzsqlgn3ji5by2rdf2gwklhbyzvpzb1iglalhqjkkrdaaaz1h")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - (list #:phases - #~(modify-phases %standard-phases - (add-before 'check 'writable-home - (lambda _ ; some tests need a writable home - (setenv "HOME" (getcwd)))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "python" "-m" "pytest" "--pyargs" "astroquery" - ;; Skip tests that require online data. - "-m" "not remote_data"))))))) + (list + #:test-flags + #~(list "--pyargs" "astroquery" + "-m" "not remote_data") + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'prepare-test-environment + (lambda _ + (setenv "HOME" (getcwd)) ; some tests need a writable home + ;; To solve pytest/conftest issue. Pytest tries to load all + ;; files with word 'test' in them. + ;; + ;; ImportError while loading conftest ... + ;; _pytest.pathlib.ImportPathMismatchError: ... + ;; + (call-with-output-file "pytest.ini" + (lambda (port) + (format port "[pytest] +python_files = test_*.py")))))))) (propagated-inputs (list python-astropy python-beautifulsoup4 @@ -1634,12 +1644,13 @@ astronomy and astrophysics.") python-pyvo python-requests)) (native-inputs - (list python-flask - python-jinja2 + (list python-astropy-healpix python-matplotlib + ;; python-mocpy : Not packed yet, optional python-pytest-astropy - python-pytest-dependency)) - (home-page "https://www.astropy.org/astroquery/") + python-pytest-dependency + python-regions)) + (home-page "https://astroquery.readthedocs.io/en/latest/index.html") (synopsis "Access online astronomical data resources") (description "Astroquery is a package that contains a collection of tools to access online Astronomical data. Each web service has its own sub-package.") @@ -1724,13 +1735,13 @@ Herschel.") (define-public python-casa-formats-io (package (name "python-casa-formats-io") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (pypi-uri "casa-formats-io" version)) (sha256 (base32 - "07cchih2ws6jf6q1a4xhkv0jk96s3w08kzxx9l1911wzqk0pw9pj")))) + "16qwr6yq86qgdb0lvnmfm5mn6g2d29b1vrmfv26v77kxm6szxr8h")))) (build-system pyproject-build-system) (arguments (list @@ -1784,7 +1795,7 @@ bad pixel tracking throughout the reduction process.") (define-public python-cdflib (package (name "python-cdflib") - (version "1.2.1") + (version "1.2.3") (source (origin (method git-fetch) ; no tests in pypi archive @@ -1793,7 +1804,7 @@ bad pixel tracking throughout the reduction process.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0v73fl69pxbk52ilhj2593zmn3qhqy4hrrwby8m9z2sq3fd5xk0v")))) + (base32 "0vpgcbc9pmx0qqfia1frnwq3jkgfp8y3ikqdnzs5bs1sr13p9p3w")))) (build-system pyproject-build-system) (arguments (list #:phases @@ -1833,13 +1844,13 @@ attempting to maintain ISTP compliance (define-public python-crds (package (name "python-crds") - (version "11.17.6") + (version "11.17.9") (source (origin (method url-fetch) (uri (pypi-uri "crds" version)) (sha256 (base32 - "1sbfl45rx21g622vm8baqv0ydcdixf1jdjgydn07sxl7kn15fa4g")))) + "0ha7ibs5lmqs9pcr546jyxzgrmx1xyqps7fsp220rvlsbsisdgm0")))) (build-system pyproject-build-system) (arguments (list @@ -1922,18 +1933,7 @@ Cesium.") (uri (pypi-uri "drms" version)) (sha256 (base32 "0mkrmr55fgca441z7hvsyri6x9cjsh0sfas3hrj0k1k10k8vszbw")))) - (build-system python-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - (replace 'check - (lambda* (#:key inputs outputs tests? - #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (setenv "JSOC_EMAIL" "jsoc@sunpy.org") - (invoke "python" "-m" "pytest" "-vv"))))))) + (build-system pyproject-build-system) (native-inputs (list python-astropy python-pytest-astropy @@ -1994,13 +1994,13 @@ code to be greatly simplified.") (define-public python-ephem (package (name "python-ephem") - (version "4.1.4") + (version "4.1.5") (source (origin (method url-fetch) (uri (pypi-uri "ephem" version)) (sha256 (base32 - "0q67z79lgwdylxagbsjm42xvsmk5jmgvghy36m2n5lb2446rz9bk")))) + "0ainqbnvw320pc61q5b6ad6f2mhn1pvrlnq489cwfx0m82mahr0c")))) (build-system python-build-system) (native-inputs (list tzdata)) (home-page "https://rhodesmill.org/pyephem/") @@ -2118,27 +2118,22 @@ of astronomical sources.") (build-system pyproject-build-system) (arguments (list + #:test-flags + #~(list "-m" "not remote_data" + ;; TODO: Review failing tests later when any upstream + ;; suggestions are provided: + ;; https://github.com/poliastro/poliastro/issues/1618 + "-k" (string-append "not test_czml_add_trajectory" + " and not test_czml_custom_packet" + " and not test_czml_ground_station" + " and not test_czml_groundtrack" + " and not test_czml_preamble")) #:phases #~(modify-phases %standard-phases ;; NOTE: Tests take about 7-10 minutes to pass. (add-before 'check 'prepare-test-environment (lambda _ - (setenv "HOME" "/tmp") - ;; TODO: Review failing tests later when any upstream - ;; suggestions are provided: - ;; https://github.com/poliastro/poliastro/issues/1618 - (substitute* "tests/test_czml.py" - (("def test_czml_add_trajectory") "def __off_test_czml_add_trajectory") - (("def test_czml_custom_packet") "def __off_test_czml_custom_packet") - (("def test_czml_ground_station") "def __off_test_czml_ground_station") - (("def test_czml_groundtrack") "def __off_test_czml_groundtrack") - (("def test_czml_preamble") "def __off_test_czml_preamble")))) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "python" "-m" "pytest" - ;; Skip tests that need remote data. - "-m" "not remote_data"))))))) + (setenv "HOME" "/tmp")))))) (native-inputs (list python-coverage python-hypothesis @@ -2371,13 +2366,13 @@ changing the pixel resolution, orientation, coordinate system.") (define-public python-sgp4 (package (name "python-sgp4") - (version "2.22") + (version "2.23") (source (origin (method url-fetch) (uri (pypi-uri "sgp4" version)) (sha256 - (base32 "1yc6gcbhz80i875j0wf6ikx7rzs0m7m1qp72dmdhdjidmpma5w0p")))) + (base32 "0aalbmldks6ykgkcxwkvnp04q0avhv903m5zwvg8i7zvl99xrbfq")))) (build-system python-build-system) (propagated-inputs (list python-numpy)) @@ -2601,24 +2596,22 @@ of axis order, spatial projections, and spectral units that exist in the wild. (file-name (git-file-name name version)) (sha256 (base32 "0kzcncqir4v7nhk9lxj9gxr32p3krkaqa58y2i4kksgxxy24qw4z")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments (list - ;; NOTE: (Sharlatan-20220523T231348+0100): Tests depends on old Python2 - ;; libarry `sphere' - #:tests? #f + ;; XXX: Disable one failing test + ;; See https://github.com/spacetelescope/spherical_geometry/issues/252 + #:test-flags #~(list "-k" "not test_overlap") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'preparations (lambda _ - ;; Fixing: setuptools-scm was unable to detect version for ... - (substitute* "setup.py" - (("use_scm_version=True") - (format #f "version=~s" #$version)) - (("setup_requires=\\['setuptools_scm'\\],.*") - "")) + (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version) ;; Use our own libraries in place of bundles. - (setenv "USE_SYSTEM_QD" "1")))))) + (setenv "USE_SYSTEM_QD" "1"))) + (add-before 'check 'build-extensions + (lambda _ + (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs (list python-pytest python-setuptools-scm)) @@ -2674,7 +2667,7 @@ Science Institute} image array manipulation functions.") (sha256 (base32 "14457izlbnks84dyza75ib3nvx2w8nhlqm9vc1zb7hbhknb5gjvw")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments (list #:tests? #f)) ;No tests (propagated-inputs (list python-numpy)) @@ -2702,11 +2695,23 @@ task}.") (build-system pyproject-build-system) (arguments (list - ;; XXX: Fix failing tests. There are errors to load test files. - #:tests? #f)) + #:phases + #~(modify-phases %standard-phases + ;; Test steps are taken from GitHub Actions. + ;; See https://github.com/spacetelescope/stsci.stimage/issues/27 + (replace 'check + (lambda _ + (copy-file (string-append + #$(this-package-native-input "python-waf") "/bin/waf") + "waf") + (invoke "python" "waf" "configure" "build" "do_tests")))))) (propagated-inputs (list python-numpy)) - (native-inputs (list python-codecov python-pytest python-pytest-cov - python-setuptools-scm)) + (native-inputs + (list python-codecov + python-pytest + python-pytest-cov + python-setuptools-scm + python-waf)) (home-page "https://stscistimage.readthedocs.io/en/latest/") (synopsis "STScI image processing") (description "This package provides an astronomical Python package with @@ -2974,44 +2979,40 @@ low quality ones") (license license:gpl3+))) (define-public libpasastro - ;; NOTE: (Sharlatan-20210122T215921+0000): the version tag has a build - ;; error on spice which is resolved with the latest commit. - (let ((commit "e3c218d1502a18cae858c83a9a8812ab197fcb60") - (revision "1")) - (package - (name "libpasastro") - (version (git-version "1.4.0" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/pchev/libpasastro") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0asp2sn34nds5va2ghppwc41vb6j3d1mf049j949rgrll817kx47")))) - (build-system gnu-build-system) - (arguments - `(#:tests? #f - #:make-flags - (list - ,(match (or (%current-target-system) (%current-system)) - ((or "aarch64-linux" "armhf-linux" "i686-linux" "x86_64-linux") - "OS_TARGET=linux") - (_ #f)) - ,(match (or (%current-target-system) (%current-system)) - ("i686-linux" "CPU_TARGET=i386") - ("x86_64-linux" "CPU_TARGET=x86_64") - ((or "armhf-linux" "aarch64-linux") "CPU_TARGET=armv7l") - (_ #f)) - (string-append "PREFIX=" (assoc-ref %outputs "out"))) - #:phases - (modify-phases %standard-phases - (delete 'configure)))) - (home-page "https://github.com/pchev/libpasastro") - (synopsis "Interface to astronomy library for use from Pascal program") - (description - "This package provides shared libraries to interface Pascal program with + (package + (name "libpasastro") + (version "1.4.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pchev/libpasastro") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1h92p9ph3zi4w8krny1azd9wgwna2nf07ims983jcky1chkfm0is")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f + #:make-flags + (list + ,(match (or (%current-target-system) (%current-system)) + ((or "aarch64-linux" "armhf-linux" "i686-linux" "x86_64-linux") + "OS_TARGET=linux") + (_ #f)) + ,(match (or (%current-target-system) (%current-system)) + ("i686-linux" "CPU_TARGET=i386") + ("x86_64-linux" "CPU_TARGET=x86_64") + ((or "armhf-linux" "aarch64-linux") "CPU_TARGET=armv7l") + (_ #f)) + (string-append "PREFIX=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (home-page "https://github.com/pchev/libpasastro") + (synopsis "Interface to astronomy library for use from Pascal program") + (description + "This package provides shared libraries to interface Pascal program with standard astronomy libraries: @itemize @@ -3020,12 +3021,12 @@ standard astronomy libraries: @item @code{libpaswcs.so}: Interface with libwcs to work with FITS WCS. @item @code{libpasspice.so}: To work with NAIF/SPICE kernel. @end itemize\n") - (license license:gpl2+)))) + (license license:gpl2+))) (define-public libxisf (package (name "libxisf") - (version "0.2.9") + (version "0.2.10") (source (origin (method git-fetch) @@ -3034,7 +3035,7 @@ standard astronomy libraries: (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "02cxv86h0ng4kmvyjkf7cr2ak2i3vpf0q0ik7jg4nmqjsidcs796")))) + (base32 "0q5qipn8887yhrk9pmi4fksxxmqas3w2aw2p194yhzkjapxk2k9h")))) (build-system cmake-build-system) (arguments (list #:configure-flags #~(list "-DUSE_BUNDLED_LIBS=OFF"))) @@ -3153,23 +3154,21 @@ Mercator, Mollweide, Peters, polyconic, orthographic and rectangular.") (sha256 (base32 "0hwf97kng1zy8rxyglw04x89p0bg07zq30hgghm20yxiw2xc8ng7")))) (build-system gnu-build-system) + (arguments + (list + #:configure-flags #~(list "CFLAGS=-O2 -g -fcommon") + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'fix-tests + (lambda _ + ;; Remove reference to non-existent file. + (substitute* "po/POTFILES.in" + (("src/gtk-sat-tree\\.c") ""))))))) (native-inputs - `(("intltool" ,intltool) - ("gettext" ,gettext-minimal) - ("pkg-config" ,pkg-config))) + (list gettext-minimal intltool pkg-config)) (inputs (list curl glib goocanvas gtk+)) - (arguments - `(#:configure-flags '("CFLAGS=-O2 -g -fcommon") - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-tests - (lambda _ - ;; Remove reference to non-existent file. - (substitute* "po/POTFILES.in" - (("src/gtk-sat-tree\\.c") - "")) - #t))))) + (home-page "http://gpredict.oz9aec.net/index.php") (synopsis "Satellite tracking and orbit prediction application") (description "Gpredict is a real-time satellite tracking and orbit prediction @@ -3177,7 +3176,6 @@ application. It can track a large number of satellites and display their position and other data in lists, tables, maps, and polar plots (radar view). Gpredict can also predict the time of future passes for a satellite, and provide you with detailed information about each pass.") - (home-page "http://gpredict.oz9aec.net/index.php") (license license:gpl2+))) (define-public sgp4 @@ -3231,19 +3229,8 @@ It can be used to calculate the trajectory of satellites.") (base32 "0a6wb1a9adwd01dmy0r03xxp8iz9y7mvh30088ajilhj4lf90vxa")))) (build-system cmake-build-system) (arguments - `(#:tests? #f ;no test provided - #:phases - (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key outputs #:allow-other-keys) - (mkdir-p "build") - (chdir "build") - (invoke - "cmake" - "-G" "Unix Makefiles" - "-DCMAKE_BUILD_TYPE=Release" - (string-append "-DCMAKE_INSTALL_PREFIX=" (assoc-ref outputs "out")) - "..")))))) + (list ;; No test provided + #:tests? #f)) (native-inputs (list boost pkg-config)) (inputs @@ -3404,13 +3391,13 @@ Moon position, etc.") (define-public python-jplephem (package (name "python-jplephem") - (version "2.19") + (version "2.20") (source (origin (method url-fetch) (uri (pypi-uri "jplephem" version)) (sha256 - (base32 "1kvdzwyh0invinvcnwfr14r9zbqzcwkdh0cpzw1m4vkdcm64aqn1")))) + (base32 "1yp1l3n07849411099f976ps0pyv8jk8k5l9da9nhv54ir86v65v")))) (build-system pyproject-build-system) (arguments (list @@ -3435,13 +3422,13 @@ milliarcsecond).") (define-public python-jwst (package (name "python-jwst") - (version "1.12.3") + (version "1.12.5") (source (origin (method url-fetch) (uri (pypi-uri "jwst" version)) (sha256 (base32 - "0bw7i0pmpdgk2zf47d57g45hm3yb4wbrf1p19z9vg555qv4f4kr5")))) + "0blrl00lz1snhcnr7j59nh05rnpqxdnfp8hhgagkr50h85q4smrn")))) (build-system pyproject-build-system) (arguments (list @@ -3502,13 +3489,13 @@ exposures and high-level data products (mosaics, extracted spectra, etc.).") (define-public python-pyerfa (package (name "python-pyerfa") - (version "2.0.0.3") + (version "2.0.1.1") (source (origin (method url-fetch) (uri (pypi-uri "pyerfa" version)) (sha256 - (base32 "0f8zykzxjsiwv5ibdn5asla2ng2xl0xdkrcrrd61j31mb3xbnzyp")) + (base32 "0swsdkipnk73iflsa7qbaw89wahbnfyvplqaxwi0yfrxippp9b6v")) (modules '((guix build utils))) (snippet #~(begin @@ -3519,6 +3506,7 @@ exposures and high-level data products (mosaics, extracted spectra, etc.).") (list ;; Disable only one failing test: ;; AttributeError: __warningregistry__ + ;; See https://github.com/liberfa/pyerfa/issues/126 #:test-flags #~(list "-k" "not test_errwarn_reporting") #:phases #~(modify-phases %standard-phases @@ -3547,13 +3535,21 @@ functions, so that they can be called with scalar or array inputs.") (define-public python-pynbody (package (name "python-pynbody") - (version "1.3.1") + (version "1.4.2") (source (origin - (method url-fetch) - (uri (pypi-uri "pynbody" version)) + (method git-fetch) ;PyPi doesn't have not prebuit version. + (uri (git-reference + (url "https://github.com/pynbody/pynbody") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "1yp7ja66zqmbnh7bbwbyimxq1nkrmjrcif2rzfm1hswm0fp2fbga")))) + (base32 "1lwjs8vf3pc4a64c93fa5k6r276g1c60722swns2r10ig1s4wk0a")) + (modules '((guix build utils))) + (snippet + ;; Symlink goes to not existing directory. + #~(for-each delete-file '("docs/testdata" + "docs/tutorials/example_code/testdata"))))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list @@ -3584,7 +3580,12 @@ functions, so that they can be called with scalar or array inputs.") "--ignore=tests/sph_smooth_test.py" "--ignore=tests/subfind_test.py" "--ignore=tests/subfindhdf_gadget4_test.py" - "--ignore=tests/tipsy_test.py"))) + "--ignore=tests/tipsy_test.py") + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'set-compiler + (lambda _ + (setenv "CC" #$(cc-for-target))))))) (native-inputs (list python-cython python-pandas @@ -3723,9 +3724,21 @@ datetime object.") (build-system pyproject-build-system) (arguments (list - ;; XXX: Test needs more love to pass. - ;; ERROR collecting synphot/tests/test_utils.py - #:tests? #f)) + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'prepare-test-environment + (lambda _ + (invoke "python" "setup.py" "build_ext" "--inplace") + ;; To solve pytest/conftest issue. Pytest tries to load all + ;; files with word 'test' in them. + ;; + ;; ImportError while loading conftest ... + ;; _pytest.pathlib.ImportPathMismatchError: ... + ;; + (call-with-output-file "pytest.ini" + (lambda (port) + (format port "[pytest] +python_files = test_*.py")))))))) (propagated-inputs (list python-astropy python-numpy python-scipy)) (native-inputs (list python-pytest python-pytest-astropy python-setuptools-scm)) @@ -3771,32 +3784,23 @@ between image and reference catalogs. Currently only aligning images with @code{FITS WCS} and @code{JWST gWCS} are supported.") (license license:bsd-3))) -(define-public python-asdf +(define-public python-asdf-3.0 (package (name "python-asdf") - (version "2.15.0") + (version "3.0.1") (source (origin (method url-fetch) (uri (pypi-uri "asdf" version)) (sha256 - (base32 "11s56797l5330kkhppkyz0bsvms016knmyswj4gx91zrxf8iqvv8")))) + (base32 "1jsk7b4mx04l0a08j832vnl309dba3gjnha9mbd61dzs9ridrfna")))) (build-system pyproject-build-system) - (arguments - (list #:test-flags - #~(list "-k" (string-append - "not test_overwrite" - " and not test_tagging_scalars" - " and not test_info_command" - " and not test_array_inline_threshold_recursive")))) (native-inputs - (list python-astropy - python-fsspec + (list python-fsspec python-packaging python-psutil python-pytest python-pytest-doctestplus - python-pytest-openfiles python-pytest-remotedata python-semantic-version python-setuptools-scm)) @@ -3804,10 +3808,9 @@ between image and reference catalogs. Currently only aligning images with (list python-asdf-standard python-asdf-transform-schemas python-asdf-unit-schemas + python-attrs ;; for vendorized jsonschema python-importlib-metadata - python-importlib-resources python-jmespath - python-jsonschema python-lz4 python-numpy python-pyyaml)) @@ -3819,6 +3822,34 @@ interchange format for scientific data. This package contains the Python implementation of the ASDF Standard.") (license license:bsd-3))) +(define-public python-asdf-2.15 + (package + (inherit python-asdf-3.0) + (version "2.15.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "asdf" version)) + (sha256 + (base32 "11s56797l5330kkhppkyz0bsvms016knmyswj4gx91zrxf8iqvv8")))) + (arguments + (list #:test-flags + #~(list "-k" (string-append + "not test_overwrite" + " and not test_tagging_scalars" + " and not test_info_command" + " and not test_array_inline_threshold_recursive")))) + (native-inputs + (modify-inputs (package-native-inputs python-asdf-3.0) + (prepend python-astropy python-pytest-openfiles))) + (propagated-inputs + (modify-inputs (package-propagated-inputs python-asdf-3.0) + (prepend python-jsonschema python-importlib-resources))))) + +(define-public python-asdf + ;; Default version of ASDF.. + python-asdf-2.15) + (define-public python-asdf-standard (package (name "python-asdf-standard") @@ -4101,13 +4132,13 @@ default) to world coordinates.") (define-public python-rad (package (name "python-rad") - (version "0.17.1") + (version "0.18.0") (source (origin (method url-fetch) (uri (pypi-uri "rad" version)) (sha256 (base32 - "11jhh3qmd00g8sn6hcfshbpb2qy1rfj0xkxn30pd63lqazg4ra3p")))) + "1wgnbhldgq0j55yzg33y11vd5k5nzwckiccxywvmq518qh19pky5")))) (build-system pyproject-build-system) (arguments (list @@ -4163,13 +4194,13 @@ channels (define-public python-roman-datamodels (package (name "python-roman-datamodels") - (version "0.17.1") + (version "0.18.0") (source (origin (method url-fetch) (uri (pypi-uri "roman_datamodels" version)) (sha256 (base32 - "1y12cp8172i4a314gmhpi86jw6pfylz1adh0rzr5zqmvd3mrjqlj")))) + "0crlmd99p2nyqmrbykdqqng7v8zb4sibm8j9aqrq3ppak3r3r7q1")))) (build-system pyproject-build-system) (arguments (list @@ -4207,7 +4238,7 @@ pipelines.") (define-public python-astroalign (package (name "python-astroalign") - (version "2.4.2") + (version "2.5.1") (source (origin ;; There are no tests in the PyPI tarball. @@ -4217,7 +4248,7 @@ pipelines.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0hly20a65540hr3l1lsd1i4d90a0vdrbwnn6zx3z8s89ha9lq3pb")))) + (base32 "1kr5cszcxvrdbksy7mvv3ps1h1jzrn4yamfr6x7whkbi6bpqf7xp")))) (build-system pyproject-build-system) (native-inputs (list python-astropy @@ -4265,13 +4296,13 @@ orbit around the Earth.") (define-public python-wiimatch (package (name "python-wiimatch") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (pypi-uri "wiimatch" version)) (sha256 (base32 - "0x6p5z6a2cqinckwlpinjxagvmswl149s1jn6ihmdxk4k0h8rrz0")))) + "15kq7z30m9i286ncs9xvpaq3dq1p5fa47jz21prq146qwr7j6dm8")))) (build-system pyproject-build-system) (propagated-inputs (list python-numpy python-scipy)) (native-inputs (list python-codecov python-pytest python-pytest-cov |