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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aef9625534..b74d8925db 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15058,6 +15058,34 @@ copy number estimation, as described by @url{doi:10.1016/j.cell.2012.04.023,Nik-Zainal et al.}") (license license:gpl3))) +(define-public r-catch + (let ((commit "196ddd5a51b1a5f5daa01de53fdaad9b7505e084") + (revision "1")) + (package + (name "r-catch") + (version (git-version "1.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/zhanyinx/CaTCH") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "11c7f1fc8f57wnwk1hrgr5y814m80zj8gkz5021vxyxy2v02cqgd")))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'chdir + (lambda _ (chdir "CaTCH")))))) + (home-page "https://github.com/zhanyinx/CaTCH_R") + (synopsis "Call a hierarchy of domains based on Hi-C data") + (description "This package allows building the hierarchy of domains +starting from Hi-C data. Each hierarchical level is identified by a minimum +value of physical insulation between neighboring domains.") + (license license:gpl2+)))) + (define-public r-spectre (let ((commit "f6648ab3eb9499300d86502b5d60ec370ae9b61a") (revision "1")) |