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| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a91ee8fe06..46a93f88af 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4727,6 +4727,32 @@ makes available functions for visualization and exploration of the data and results.") (license license:gpl3+))) +(define-public r-dss + (package + (name "r-dss") + (version "2.46.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "DSS" version)) + (sha256 + (base32 + "1qm0pq6495fn2zrbddaadb1w01ry76rg8mmbmxf3zws9pww48jgf")))) + (properties `((upstream-name . "DSS"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-biocparallel r-bsseq)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/DSS") + (synopsis "Dispersion shrinkage for sequencing data") + (description + "DSS is an R library performing differential analysis for count-based +sequencing data. It detects @dfn{differentially expressed genes} (DEGs) from +RNA-seq, and differentially methylated loci or regions (DML/DMRs) from +@dfn{bisulfite sequencing} (BS-seq). The core of DSS is a dispersion +shrinkage method for estimating the dispersion parameter from Gamma-Poisson or +Beta-Binomial distributions.") + ;; Any version of the GPL + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-bluster (package (name "r-bluster") |