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-rw-r--r--gnu/packages/bioinformatics.scm25
1 files changed, 14 insertions, 11 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c175227997..1ceb40cb95 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5057,21 +5057,24 @@ distribution, coverage uniformity, strand specificity, etc.")
(modify-phases %standard-phases
(replace 'bootstrap
(lambda _
- (invoke "bash" "gen_auto")))
+ (substitute* "gen_tools_am"
+ (("/usr/bin/env.*") (which "perl")))
+ (invoke "bash" "gen_auto")
+ #t))
(add-after 'build 'build-additional-tools
(lambda* (#:key make-flags #:allow-other-keys)
- (every (lambda (dir)
- (with-directory-excursion (string-append "tools/" dir)
- (zero? (apply system* "make" make-flags))))
- dirs)))
+ (for-each (lambda (dir)
+ (with-directory-excursion (string-append "tools/" dir)
+ (apply invoke "make" make-flags)))
+ dirs)
+ #t))
(add-after 'install 'install-additional-tools
(lambda* (#:key make-flags #:allow-other-keys)
- (fold (lambda (dir result)
- (with-directory-excursion (string-append "tools/" dir)
- (and result
- (zero? (apply system*
- `("make" ,@make-flags "install"))))))
- #t dirs)))))))
+ (for-each (lambda (dir)
+ (with-directory-excursion (string-append "tools/" dir)
+ (apply invoke `("make" ,@make-flags "install"))))
+ dirs)
+ #t))))))
(inputs
`(("gsl" ,gsl)
("boost" ,boost)