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| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3d6a545ff8..e01af8f7e5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1521,6 +1521,40 @@ methylation microarrays, and an object depicting which CpGs on the array are associated with cell type.") (license license:artistic2.0))) +(define-public r-flowsorted-blood-epic + (package + (name "r-flowsorted-blood-epic") + (version "2.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "FlowSorted.Blood.EPIC" version + 'experiment)) + (sha256 + (base32 + "1vybj69jxnirqg6ik03q3pb1vv23z8mir7wpi2ys7iljf5ixzgl1")))) + (properties `((upstream-name . "FlowSorted.Blood.EPIC"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationhub + r-experimenthub + r-genefilter + r-minfi + r-nlme + r-quadprog + r-s4vectors + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/immunomethylomics/FlowSorted.Blood.EPIC") + (synopsis + "Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells") + (description + "This package provides raw data objects to be used for blood cell +proportion estimation in minfi and similar packages. The +@code{FlowSorted.Blood.EPIC} object is based in samples assayed by Brock +Christensen and colleagues; for details see Salas et al. 2018. +https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110554.") + (license license:gpl3))) + (define-public r-genelendatabase (package (name "r-genelendatabase") |