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-rw-r--r--gnu/packages/bioconductor.scm33
1 files changed, 17 insertions, 16 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 54849f30f3..ca001bc4ba 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1152,44 +1152,45 @@ determining dependencies between variables, code improvement suggestions.")
(define-public r-chippeakanno
(package
(name "r-chippeakanno")
- (version "3.16.1")
+ (version "3.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ChIPpeakAnno" version))
(sha256
(base32
- "1x98d8iwrxjwdz1s5cnvi6flynw9gdkmara9gwf205qxgmy7j3a3"))))
+ "089v16mm5m0rlyyyd0d6rz8gwb852zf3bcdrrw70wanlfjn258q7"))))
(properties `((upstream-name . "ChIPpeakAnno")))
(build-system r-build-system)
(propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
("r-biocmanager" ,r-biocmanager)
- ("r-biostrings" ,r-biostrings)
- ("r-delayedarray" ,r-delayedarray)
- ("r-go-db" ,r-go-db)
("r-biomart" ,r-biomart)
+ ("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
+ ("r-dbi" ,r-dbi)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-ensembldb" ,r-ensembldb)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
- ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-go-db" ,r-go-db)
+ ("r-graph" ,r-graph)
+ ("r-idr" ,r-idr)
("r-iranges" ,r-iranges)
- ("r-matrixstats" ,r-matrixstats)
- ("r-annotationdbi" ,r-annotationdbi)
("r-limma" ,r-limma)
+ ("r-matrixstats" ,r-matrixstats)
("r-multtest" ,r-multtest)
("r-rbgl" ,r-rbgl)
- ("r-graph" ,r-graph)
("r-regioner" ,r-regioner)
- ("r-dbi" ,r-dbi)
- ("r-ensembldb" ,r-ensembldb)
- ("r-biobase" ,r-biobase)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-seqinr" ,r-seqinr)
- ("r-idr" ,r-idr)
- ("r-genomicalignments" ,r-genomicalignments)
("r-summarizedexperiment" ,r-summarizedexperiment)
- ("r-rsamtools" ,r-rsamtools)
("r-venndiagram" ,r-venndiagram)))
(home-page "http://bioconductor.org/packages/ChIPpeakAnno")
(synopsis "Peaks annotation from ChIP-seq and ChIP-chip experiments")