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| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 36ab137519..ea8a885c5f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13700,6 +13700,39 @@ visualization of transcript structures, and matching of assembled transcripts to annotation.") (license license:artistic2.0))) +(define-public r-megadepth + (package + (name "r-megadepth") + (version "1.2.3") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "megadepth" version)) + (sha256 + (base32 + "0grgj7bzyqnxby0sx5ic1h9bzmx19xwl0a5b3v6wbnwqcla2i3kg")))) + (properties `((upstream-name . "megadepth"))) + (build-system r-build-system) + (inputs `(("megadepth" ,megadepth))) + (propagated-inputs + `(("r-cmdfun" ,r-cmdfun) + ("r-dplyr" ,r-dplyr) + ("r-fs" ,r-fs) + ("r-genomicranges" ,r-genomicranges) + ("r-magrittr" ,r-magrittr) + ("r-readr" ,r-readr) + ("r-xfun" ,r-xfun))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/LieberInstitute/megadepth") + (synopsis "BigWig and BAM related utilities") + (description + "This package provides an R interface to Megadepth. It is particularly +useful for computing the coverage of a set of genomic regions across bigWig or +BAM files. With this package, you can build base-pair coverage matrices for +regions or annotations of your choice from BigWig files.") + (license license:artistic2.0))) + (define-public r-tximeta (package (name "r-tximeta") |