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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6aaee38295..7dcc6da1cb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14637,3 +14637,26 @@ for the analysis and visualization of raw nanopore signal.") (description "This package provides a @acronym{VCF,Variant Call Format} parser for Python.") (license license:expat))) + +(define-public nanosv + (package + (name "nanosv") + (version "1.2.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "NanoSV" version)) + (sha256 + (base32 + "1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg")))) + (build-system python-build-system) + (inputs + `(("python-configparser" ,python-configparser) + ("python-pysam" ,python-pysam) + ("python-pyvcf" ,python-pyvcf))) + (home-page "https://github.com/mroosmalen/nanosv") + (synopsis "Structural variation detection tool for Oxford Nanopore data.") + (description "NanoSV is a software package that can be used to identify +structural genomic variations in long-read sequencing data, such as data +produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION +instruments, or Pacific Biosciences RSII or Sequel sequencers.") + (license license:expat))) |