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| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ea8a885c5f..b2d687a5e6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13733,6 +13733,39 @@ BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files.") (license license:artistic2.0))) +(define-public r-beclear + (package + (name "r-beclear") + (version "2.8.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BEclear" version)) + (sha256 + (base32 + "0w18livng2gcmjgvws7pix3gsnj237rs34sgwxsfmn8p5vfx8b30")))) + (properties `((upstream-name . "BEclear"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-biocparallel" ,r-biocparallel) + ("r-data-table" ,r-data-table) + ("r-futile-logger" ,r-futile-logger) + ("r-matrix" ,r-matrix) + ("r-outliers" ,r-outliers) + ("r-rcpp" ,r-rcpp) + ("r-rdpack" ,r-rdpack))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/uds-helms/BEclear") + (synopsis "Correction of batch effects in DNA methylation data") + (description + "This package provides functions to detect and correct for batch effects +in DNA methylation data. The core function is based on latent factor models +and can also be used to predict missing values in any other matrix containing +real numbers.") + (license license:gpl3))) + (define-public r-tximeta (package (name "r-tximeta") |