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| -rw-r--r-- | gnu/packages/bioconductor.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d3e16cd859..8664f1139f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11661,6 +11661,33 @@ storing these data. Basic methods are accessing/replacing, subsetting, printing and plotting @code{aCGH} objects.") (license license:gpl2))) +(define-public r-acme + (package + (name "r-acme") + (version "2.50.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ACME" version)) + (sha256 + (base32 + "0h4bqbbqcwc938q7lysk5l35f64xz9d1bsniv2wshmlr4rr0zpcg")))) + (properties `((upstream-name . "ACME"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-biocgenerics)) + (home-page "https://bioconductor.org/packages/aCGH/") + (synopsis "Calculating microarray enrichment") + (description + "This package implements @dfn{algorithms for calculating microarray +enrichment} (ACME), and it is a set of tools for analysing tiling array of +@dfn{combined chromatin immunoprecipitation with DNA microarray} (ChIP/chip), +DNAse hypersensitivity, or other experiments that result in regions of the +genome showing enrichment. It does not rely on a specific array technology +(although the array should be a tiling array), is very general (can be applied +in experiments resulting in regions of enrichment), and is very insensitive to +array noise or normalization methods. It is also very fast and can be applied +on whole-genome tiling array experiments quite easily with enough memory.") + (license license:gpl2+))) + ;; This is a CRAN package, but it depends on Bioconductor packages, so we put ;; it here. (define-public r-activedriverwgs |