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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2844c46075..b7d39ea359 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9389,3 +9389,40 @@ novo exon-skipping events directly from raw RNA-seq data without the prior knowledge of gene annotation information. GESS stands for the graph-based exon-skipping scanner detection scheme.") (license license:bsd-3))) + +(define-public phylip + (package + (name "phylip") + (version "3.696") + (source + (origin + (method url-fetch) + (uri (string-append "http://evolution.gs.washington.edu/phylip/" + "download/phylip-" version ".tar.gz")) + (sha256 + (base32 + "01jar1rayhr2gba2pgbw49m56rc5z4p5wn3ds0m188hrlln4a2nd")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; no check target + #:make-flags (list "-f" "Makefile.unx" "install") + #:parallel-build? #f ; not supported + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'enter-dir + (lambda _ (chdir "src") #t)) + (delete 'configure) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((target (string-append (assoc-ref outputs "out") + "/bin"))) + (mkdir-p target) + (for-each (lambda (file) + (install-file file target)) + (find-files "../exe" ".*"))) + #t))))) + (home-page "http://evolution.genetics.washington.edu/phylip/") + (synopsis "Tools for inferring phylogenies") + (description "PHYLIP (the PHYLogeny Inference Package) is a package of +programs for inferring phylogenies (evolutionary trees).") + (license license:bsd-2))) |