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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a92589eef7..fe642bb693 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10869,6 +10869,28 @@ traditional read alignments) and massively-parallel stochastic collapsed variational inference.") (license license:gpl3+))) +(define-public scallop + (package + (name "scallop") + (version "0.10.5") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/Kingsford-Group/scallop" + "/releases/download/v" version + "/scallop-" version ".tar.gz")) + (sha256 + (base32 + "0ylkhr5hsmw7bsdszrjz9yqknsijh2fl5n6rjqmdmcdky5hkr7mh")))) + (build-system gnu-build-system) + (inputs + (list boost htslib)) + (home-page "https://github.com/Kingsford-Group/scallop") + (synopsis "Reference-based transcriptome assembler for RNA-seq") + (description "Scallop is a reference-based transcript assembler. Scallop +features its high accuracy in assembling multi-exon transcripts as well as +lowly expressed transcripts.") + (license license:bsd-3))) + (define-public python-fanc (package (name "python-fanc") |