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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6cb5ea99eb..cb00842aa1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7012,6 +7012,38 @@ Values such as sequence name, sequence description, sequence quality and the sequence itself can be retrieved from these databases.") (license license:bsd-3))) +(define-public python-slamdunk + (package + (name "python-slamdunk") + (version "0.4.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/t-neumann/slamdunk") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0lv3h5k2pn1pz35kz0wk5xmricxzy8qscs2y7nwh0k6x4pn0m0s5")))) + (build-system python-build-system) + (propagated-inputs + (list python-biopython + python-intervaltree + python-joblib + python-pandas + python-pybedtools + python-pysam)) + (native-inputs + (list python-cython python-pytest)) + (home-page "https://t-neumann.github.io/slamdunk/") + (synopsis "Streamline SLAM-seq analysis with high sensitivity") + (description "SlamDunk is a fully automated tool for automated, robust, +scalable and reproducible SLAMseq data analysis. Diagnostic plotting features +and a MultiQC plugin will make your SLAMseq data ready for immediate QA and +interpretation.") + (license license:agpl3+))) + (define-public python-taggd (package (name "python-taggd") |