gnu: r-caret: Update to 6.0-83. - guix - Wojtek's customized Guix

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author	Ricardo Wurmus <rekado@elephly.net>	2019-04-19 14:42:51 +0200
committer	Ricardo Wurmus <rekado@elephly.net>	2019-04-19 14:42:51 +0200
commit	664a6bc1a6daf20b42af9d1ac9f225d29f13cff2 (patch)
tree	022ec501827c1eb5bd6318c688274963228aaec6 /scripts
parent	f00067dbfbb41a375c170f29fa963bd0acab24d8 (diff)
download	guix-664a6bc1a6daf20b42af9d1ac9f225d29f13cff2.tar.gz guix-664a6bc1a6daf20b42af9d1ac9f225d29f13cff2.zip

gnu: r-caret: Update to 6.0-83.

* gnu/packages/statistics.scm (r-caret): Update to 6.0-83.

Diffstat (limited to 'scripts')

0 files changed, 0 insertions, 0 deletions

21fd6cb3ec01aecfb64'>build-self: Help users to submit useful bug reports.Tobias Geerinckx-Rice * build-aux/build-self.scm (build): Request the ‘COMPLETE output’. 2021-10-17maint: Factorize po xref translation.Julien Lepiller This ensures we use the same method in "make" as in "guix/self.scm". * Makefile.am: Build guix/build/po.scm. * build-aux/convert-xref.scm: New file. * doc/local.mk (xref_command): Use it. * guix/self.scm (translate-cross-references): Move it... * guix/build/po.scm: Parse comments and flags separately to find fuzzy flags. (translate-cross-references): ...here. (parse-tree->assoc): Ignore fuzzy entries. 2021-06-23build: Makefile splits Scheme compilation in four steps.Ludovic Courtès Fixes <https://bugs.gnu.org/48963>. Reported by Julien Lepiller <julien@lepiller.eu>. This reduces peak memory consumption to something less unreasonable. * Makefile.am (make-go): Depend on 'make-*-go' targets; remove body. (guile-compilation-rule): New function. (MODULES_CORE, MODULES_PACKAGES, MODULES_SYSTEM, MODULES_CLI): New variables. <top level>: Call 'guile-compilation-rule' 4 times. * build-aux/compile-all.scm <top level>: Expect "--total" and "--processed". Take them into account when displaying progress reports. 2021-06-18build: Remove Guile 2.2 workaround.Ludovic Courtès * build-aux/compile-all.scm <top level>: Remove Guile 2.2 workaround. 2021-05-11Merge branch 'version-1.3.0'Maxim Cournoyer 2021-05-10maint: update-NEWS: Sort packages prior writing to the data file.Maxim Cournoyer * build-aux/update-NEWS.scm (main): Sort packages. 2021-04-29download: Use Disarchive as a last resort.Timothy Sample This is a fixed version of 66b14dccdd0d83c875ce3a8d50ceab8b6f0a3ce2, which was reverted in e74250c3c535b75dd2225a26df51febb7ed94654. * guix/download.scm (%disarchive-mirrors): New variable. (%disarchive-mirror-file): New variable. (built-in-download): Add 'disarchive-mirrors' keyword argument and pass its value along to the 'builtin:download' derivation. (url-fetch): Pass '%disarchive-mirror-file' to 'built-in-download'. * guix/scripts/perform-download.scm (perform-download): Read Disarchive mirrors from the environment and pass them to 'url-fetch'. * guix/build/download.scm (disarchive-fetch/any): New procedure. (url-fetch): Add 'disarchive-mirrors' keyword argument, use it to make a list of URIs, and use the new procedure to fetch the file if all other methods fail. * build-aux/build-self.scm (build-program)[select?]: Exclude '(guix build download)'. * guix/self.scm (compiled-guix)[*core-modules*]: Add 'guile-json' to the list of extensions. 2021-04-25import: Remove Nix importer.Ludovic Courtès This importer has suffered from bitrot and no longer works with current Nix and Nixpkgs. See <https://bugs.gnu.org/32339> and <https://bugs.gnu.org/36255>. * guix/import/snix.scm, guix/scripts/import/nix.scm, tests/snix.scm: Remove. * Makefile.am (MODULES, SCM_TESTS): Remove them. * guix/scripts/import.scm (importers): Remove "nix". * build-aux/test-env.in: Remove NIXPKGS variable. * configure.ac: Remove '--with-nixpkgs' option. * doc/guix.texi (Invoking guix import): Remove bit about "guix import nix". * etc/completion/fish/guix.fish: Likewise. 2021-04-23build-aux: Relax the regexp used to match NEWS sections.Maxim Cournoyer A number of packages doesn't really make sense in the name of the section to be substituted. This change allows using simply '*** new packages' instead of '*** 1999 new packages', for example, and have the update-NEWS.scm script update it. * build-aux/update-NEWS.scm (write-packages-added) <regexp>: Do not care about leading white space in the name of the section. 2021-04-20import: Remove Nix importer.Ludovic Courtès This importer has suffered from bitrot and no longer works with current Nix and Nixpkgs. See <https://bugs.gnu.org/32339> and <https://bugs.gnu.org/36255>. * guix/import/snix.scm, guix/scripts/import/nix.scm, tests/snix.scm: Remove. * Makefile.am (MODULES, SCM_TESTS): Remove them. * guix/scripts/import.scm (importers): Remove "nix". * build-aux/test-env.in: Remove NIXPKGS variable. * configure.ac: Remove '--with-nixpkgs' option. * doc/guix.texi (Invoking guix import): Remove bit about "guix import nix". * etc/completion/fish/guix.fish: Likewise. 2021-04-01build-self: Take care of the spinner in the parent process.Ludovic Courtès This simplifies code and mostly ensures we don't print a spinner while there's build activity going on. * build-aux/build-self.scm (build-program): Remove 'spin' and 'call-with-new-thread' call from "compute-guix-derivation" body. Remove "Computing Guix derivation" message. (proxy): Pass extra argument to 'select'. Display a spinner when 'select' returns empty lists. (build): Print "Computing Guix derivation" message here. 2021-04-01build-self: Forward sub-process build output to (current-build-output-port).Ludovic Courtès Fixes <https://bugs.gnu.org/41930>. * build-aux/build-self.scm (build-program): Add extra 'build-output' parameter. Interpret it as a socket name and connect to it; use it as the CURRENT-BUILD-OUTPUT-PORT. (proxy): New procedure. (build): Open a named socket. Accept connections and call 'proxy' on it. 2021-03-19build-self: Silent Guile warnings while computing the derivation.Ludovic Courtès In particular, silence the Guile-Git autoload warnings introduced by c1940fde43c7aca37d67589cc5cb248086d17d56. * build-aux/build-self.scm (build-program): Wrap 'guix-derivation' call in 'parameterize'. 2021-03-10ci: Remove hydra support.Mathieu Othacehe This removes hydra support to use Cuirass as the only continuous integration system. * build-aux/hydra/gnu-system.scm: Remove it. * build-aux/hydra/guix-modular.scm: Ditto. * build-aux/hydra/guix.scm: Ditto. * build-aux/cuirass/hydra-to-cuirass.scm: Ditto. * Makefile.am (EXTRA_DIST): Update it. (hydra-jobs.scm): Remove it. (cuirass-jobs.scm): Update it. * build-aux/hydra/evaluate.scm: Move it to ... * build-aux/cuirass/evaluate.scm: ... here. * build-aux/cuirass/guix-modular.scm: Remove it. * build-aux/cuirass/gnu-system.scm: Ditto. * guix/packages.scm (%hydra-supported-systems): Rename it to ... (%cuirass-supported-systems): ... this variable. * build-aux/check-final-inputs-self-contained: Adapt it. * etc/release-manifest.scm: Ditto. * gnu/ci.scm (package->alist): Remove it. (derivation->job): New procedure. (package-job, package-cross-job, cross-jobs, image-jobs, system-test-jobs, tarball-jobs): Use it. (guix-jobs): New procedure. (hydra-jobs): Rename it to ... (cuirass-jobs): ... this procedure. 2021-02-04channels: Record 'guix' channel metadata in (guix config).Ludovic Courtès Partially fixes <https://bugs.gnu.org/45896>. * guix/config.scm.in (%channel-metadata): New variable. * guix/describe.scm (channel-metadata): Use it. (current-channels): New procedure. (current-profile-entries): Clarify docstring. * guix/self.scm (compiled-guix): Add #:channel-metadata and pass it to 'make-config.scm'. (make-config.scm): Add #:channel-metadata and define '%channel-metadata' in the generated file. (guix-derivation): Add #:channel-metadata and pass it to 'compiled-guix'. * guix/channels.scm (build-from-source): Replace 'name', 'source', and 'commit' parameters with 'instance'. Pass #:channel-metadata to BUILD. (build-channel-instance): Adjust accordingly. * build-aux/build-self.scm (build-program): Add #:channel-metadata and pass it to 'guix-derivation'. (build): Add #:channel-metadata and pass it to 'build-program'. * guix/scripts/describe.scm (display-profile-info): Add optional 'channels' parameter. Pass it to 'display-profile-content'. (display-profile-content): Add optional 'channels' parameter and honor it. Iterate on CHANNELS rather than on the manifest entries of PROFILE. (guix-describe): When PROFILE is #f, call 'current-channels' and pass it to 'display-profile-info', unless it returns the empty list. 2021-02-02build: Add a --show-duration option to the SCM test-driver.Maxim Cournoyer * build-aux/test-driver.scm (script-version): Update. (show-help): Document it. (%options): Add the 'show-duration' option. (test-runner-gnu): Pass as a new argument. [test-cases-start-time]: New inner variable. [test-on-test-begin-gnu]: New hook, used to record the start time. [test-on-test-end-gnu]: Conditionally print elapsed time. Record it as the optional metadata in the test result file (.trs). * doc/guix.texi (Running the Test Suite): Document it. 2021-02-01guix package: Add '--export-channels'.Ludovic Courtès * guix/channels.scm (sexp->channel): Export. * guix/describe.scm: Use (guix channels). (manifest-entry-provenance): New procedure. * guix/scripts/package.scm (channel=?, export-channels): New procedures. (show-help, %options): Add '--export-channels'. (process-query): Honor it. * build-aux/build-self.scm (build-program)[select?]: Exclude (guix channels) to account for the (guix describe) change above. * doc/guix.texi (Invoking guix package): Document it. 2021-01-31build: test-driver.scm: Allow running as a standalone script.Maxim Cournoyer * build-aux/test-driver.scm: Add an exec-based shebang and set the script executable bit. (main): Insert a newline after the version string is printed with --version. 2021-01-31build: test-driver.scm: Add a new '--errors-only' option.Maxim Cournoyer * build-aux/test-driver.scm (show-help): Add the help text for the new '--errors-only' option. (%options): Add the errors-only option. (test-runner-gnu): Add the errors-only? parameter and update doc. Move the logging of the test data after the test has completed, so a choice can be made whether to keep it or discard it based on the value of the test result. (main): Pass the errors-only? option to the driver. * doc/guix.texi (Running the Test Suite): Document the new option. 2021-01-31build: test-driver.scm: Add test cases filtering options.Maxim Cournoyer * build-aux/test-driver.scm (show-help): Add help text for the new --select and --exclude options. (%options): Add the new select and exclude options. (test-runner-gnu): Pass them to the test runner. Update doc. (test-match-name*, test-match-name*/negated, %test-match-all): New variables. (main): Compute the test specifier based on the values of the new options and apply it to the current test runner when running the test file. * doc/guix.texi (Running the Test Suite): Document the new options. 2021-01-31build: test-driver.scm: Enable colored test results by default.Maxim Cournoyer The Automake parallel test harness does its own smart detection of the terminal color capability and always provides the --color-tests argument to the driver. This change defaults the --color-tests argument to true when the test driver is run on its own (not via Automake). * build-aux/test-driver.scm (main): Set the default value of the --color-tests argument to true when it's not explicitly provided. 2021-01-31build: test-driver.scm: Make output redirection optional.Maxim Cournoyer This makes it easier (and less surprising) for users to experiment with the custom Scheme test driver directly. The behavior is unchanged from Automake's point of view. * build-aux/test-driver.scm (main): Make the --log-file and --trs-file arguments optional and update doc. Only open, redirect and close a port to a log file when the --log-file option is provided. Only open and close a port to a trs file when the --trs-file option is provided. (test-runner-gnu): Set OUT-PORT parameter default value to the current output port. Set the TRS-PORT parameter default value to a void port. Update doc. 2020-11-12maint: update-guix-package: Optionally add sources to store.Maxim Cournoyer Following discussions in <https://issues.guix.gnu.org/43893>, keeping a copy of the updated package source is desirable when generating a release. * build-aux/update-guix-package.scm (version-controlled?): Remove variable. (call-with-temporary-git-worktree): Renamed from 'with-temporary-git-worktree'. Update doc. Do not change directory implicitly. Define as a procedure, not a syntax. (keep-source-in-store): New procedure. (main): Adjust to use with call-with-temporary-git-worktree. Add the sources to the store when GUIX_ALLOW_ME_TO_USE_PRIVATE_COMMIT is set. Exit gracefully when FIND-ORIGIN-REMOTE returns #f. (%savannah-guix-git-repo-push-url-regexp): Adjust match for a potential colon separator. * Makefile.am (GUIX_ALLOW_ME_TO_USE_PRIVATE_COMMIT): Adjust. * .dir-locals.el (scheme-mode): Remove entry for with-temporary-git-worktree. * doc/contributing.texi (Updating the Guix Package): Update doc. Co-authored-by: Ludovic Courtès <ludo@gnu.org> 2020-10-25maint: update-guix-package: Include the git.sv.gnu.org alias.Maxim Cournoyer * build-aux/update-guix-package.scm (%savannah-guix-git-repo-push-url): Rename to... (%savannah-guix-git-repo-push-url-regexp): ...this. Add the 'sv' alternative to 'savannah' and the (push) suffix in the URL regexp. (find-origin-remote): Adjust accordingly. Reported-by: Ludovic Courtès <ludo@gnu.org> 2020-10-19maint: update-guix-package: Prevent accidentally breaking guix pull.Maxim Cournoyer Fixes <https://issues.guix.gnu.org/43893>. This changes the 'update-guix-package' tool so that it: 1. Always uses a clean checkout to compute the hash of the updated 'guix' package. 2. Ensures the commit used in the updated 'guix' package definition has already been pushed upstream. * build-aux/update-guix-package.scm (%savannah-guix-git-repo-push-url): New variable. (with-input-pipe-to-string, with-temporary-git-worktree): New syntaxes. (find-origin-remote, git-add-worktree): New procedures. (commit-already-pushed?): New predicate. (main): Check the commit used has already been pushed upstream and compute the hash from a clean checkout. * doc/contributing.texi (Updating the Guix Package): Document it. * .dir-locals.el (scheme-mode): Fix indentation of with-temporary-git-worktree. 2020-10-04cuirass: Add hurd-manifest.Jan (janneke) Nieuwenhuizen * build-aux/cuirass/hurd-manifest.scm: New file. 2020-10-01ci: Add log and outputs keys.Mathieu Othacehe Add 'log and 'outputs properties to hydra objects. This way Cuirass won't have to go through every derivation to add those properties. * gnu/ci.scm (package->alist, image-jobs, system-test-jobs, tarball-jobs): Add 'log and 'outputs properties. * build-aux/hydra/guix-modular.scm (build-job): Ditto. 2020-10-01ci: Add nix-name and system keys.Mathieu Othacehe Add 'nix-name and 'system properties to hydra objects. This way Cuirass won't have to go through every derivation to add those properties. * gnu/ci.scm (package->alist, image-jobs, system-test-jobs, tarball-jobs): Add 'nix-name and 'system properties. * build-aux/hydra/guix-modular.scm (build-job): Ditto. 2020-08-29build: Remove references to the 'nix-hash' program.Ludovic Courtès * configure.ac: Remove check for 'nix-hash'. * tests/base32.scm (%nix-hash, %have-nix-hash?): Remove. ("sha256 & bytevector->nix-base32-string"): Remove test. * build-aux/pre-inst-env.in: Do not set 'NIX_HASH' environment variable. 2020-08-24Use "guile-zlib" and "guile-lzlib" instead of (guix config).Mathieu Othacehe * Makefile.am (MODULES): Remove guix/zlib.scm and guix/lzlib.scm, (SCM_TESTS): remove tests/zlib.scm, tests/lzlib.scm. * build-aux/build-self.scm (make-config.scm): Remove unused %libz variable. * configure.ac: Remove LIBZ and LIBLZ variables and check instead for Guile-zlib and Guile-lzlib. * doc/guix.texi ("Requirements"): Remove zlib requirement and add Guile-zlib and Guile-lzlib instead. * gnu/packages/package-management.scm (guix)[native-inputs]: Add "guile-zlib" and "guile-lzlib", [inputs]: remove "zlib" and "lzlib", [propagated-inputs]: ditto, [arguments]: add "guile-zlib" and "guile-lzlib" to Guile load path. * guix/config.scm.in (%libz, %liblz): Remove them. * guix/lzlib.scm: Remove it. * guix/man-db.scm: Use (zlib) instead of (guix zlib). * guix/profiles.scm (manual-database): Do not stub (guix config) in imported modules list, instead add "guile-zlib" to the extension list. * guix/scripts/publish.scm: Use (zlib) instead of (guix zlib) and (lzlib) instead of (guix lzlib), (string->compression-type, effective-compression): do not check for zlib and lzlib availability. * guix/scripts/substitute.scm (%compression-methods): Do not check for lzlib availability. * guix/self.scm (specification->package): Add "guile-zlib" and "guile-lzlib" and remove "zlib" and "lzlib", (compiled-guix): remove "zlib" and "lzlib" arguments and add guile-zlib and guile-lzlib to the dependencies, also do not pass "zlib" and "lzlib" to "make-config.scm" procedure, (make-config.scm): remove "zlib" and "lzlib" arguments as well as %libz and %liblz variables. * guix/utils.scm (lzip-port): Use (lzlib) instead of (guix lzlib) and do not check for lzlib availability. * guix/zlib.scm: Remove it. * m4/guix.m4 (GUIX_LIBZ_LIBDIR, GUIX_LIBLZ_FILE_NAME): Remove them. * tests/lzlib.scm: Use (zlib) instead of (guix zlib) and (lzlib) instead of (guix lzlib), and do not check for zlib and lzlib availability. * tests/publish.scm: Ditto. * tests/substitute.scm: Do not check for lzlib availability. * tests/utils.scm: Ditto. * tests/zlib.scm: Remove it. 2020-07-11maint: Remove 'build-aux/git-authenticate.scm'.Ludovic Courtès * Makefile.am (channel_intro_commit, channel_intro_signer): New variables. (authenticate): Use it. (EXTRA_DIST): Remove 'build-aux/git-authenticate.scm'. * build-aux/git-authenticate.scm: Remove. 2020-06-16maint: "make authenticate" behaves like 'guix pull' by default.Ludovic Courtès * build-aux/git-authenticate.scm (%use-historical-authorizations?) (%introductory-commit): New variables. * build-aux/git-authenticate.scm (git-authenticate): Use pass the empty list as #:default-authorizations when %USE-HISTORICAL-AUTHORIZATIONS? is false. 2020-06-16git-authenticate: Cache takes a key parameter.Ludovic Courtès * guix/git-authenticate.scm (authenticated-commit-cache-file) (cache-authenticated-commit, previously-authenticated-commits): Add 'key' parameter and honor it. * build-aux/git-authenticate.scm (git-authenticate): Pass "channels/guix" as the key. 2020-06-05Add (guix git-authenticate).Ludovic Courtès * build-aux/git-authenticate.scm (commit-signing-key) (read-authorizations, commit-authorized-keys, authenticate-commit) (load-keyring-from-blob, load-keyring-from-reference) (authenticate-commits, authenticated-commit-cache-file) (previously-authenticated-commits, cache-authenticated-commit): Remove. * build-aux/git-authenticate.scm (git-authenticate): Pass #:default-authorizations to 'authenticate-commits'. * guix/git-authenticate.scm: New file, with code taken from 'build-aux/git-authenticate.scm'. Remove references to '%historical-authorized-signing-keys' and add #:default-authorizations parameter instead. * Makefile.am (MODULES): Add it. (authenticate): Depend on guix/git-authenticate.go. 2020-06-02git-authenticate: Rename '%committers' to '%historical-committers'.Ludovic Courtès * build-aux/git-authenticate.scm (%committers): Rename to... (%historical-committers): ... this. (%authorized-signing-keys): Rename to... (%historical-authorized-signing-keys): ... this. (authenticate-commit): Adjust accordingly. 2020-05-28update-guix-package: Use 'origin-hash'.Vincent Legoll * gnu/packages/package-management.scm (main): Use 'origin-hash' instead of 'origin-sha256'. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> 2020-05-22maint: Add "make check-channel-news".Ludovic Courtès * build-aux/check-channel-news.scm: New file. * Makefile.am (EXTRA_DIST): Add it. (check-channel-news): New phony rule. * doc/contributing.texi (Commit Access): Mention "make check-channel-news".


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