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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-04-28 19:01:22 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-04-29 20:28:04 +0200 |
| commit | ee4f843e4673802a5b927cba762db60c110b4561 (patch) | |
| tree | 04931a9bbe3211c728585f52d12a8a858e67bc64 /gnu | |
| parent | e8d54750456e496f43190cfff8121adbe1d4a715 (diff) | |
| download | guix-ee4f843e4673802a5b927cba762db60c110b4561.tar.gz guix-ee4f843e4673802a5b927cba762db60c110b4561.zip | |
gnu: r-bgmix: Update to 1.59.0.
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.59.0.
[arguments]: Add build phase 'avoid-naming-conflict.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 15 |
1 files changed, 13 insertions, 2 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 71b04e8066..d4d7147a69 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -16736,16 +16736,27 @@ cellular organization in health and disease.") (define-public r-bgmix (package (name "r-bgmix") - (version "1.58.0") + (version "1.59.0") (source (origin (method url-fetch) (uri (bioconductor-uri "BGmix" version)) (sha256 (base32 - "0r4cxrjvf3qr5514lsw1s53h4by3djb9ipkz7bi979w343dn9xfx")))) + "16fzgxcy4sk0kd67vzdxqz81s84dvh4bqss9cbl9bn6vhpfsnfyf")))) (properties `((upstream-name . "BGmix"))) (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + ;; GCC's c++/bits/specfun.h (included by cmath) provides a std::beta + ;; procedure. + (add-after 'unpack 'avoid-naming-conflict + (lambda _ + (substitute* "src/BGmix_main.cpp" + (("\\bbeta\\b") "::beta") + (("\\*\\*::beta,") "**beta,"))))))) (propagated-inputs (list r-kernsmooth)) (home-page "https://bioconductor.org/packages/BGmix/") |