aboutsummaryrefslogtreecommitdiff
path: root/gnu
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2023-04-28 18:00:09 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-04-29 20:28:00 +0200
commitccc6ebc63f34343e318ae7558dfad12b70538f38 (patch)
treeb4657cb15454cf29a1179e78a673c04cfb9ab264 /gnu
parent596dec968e76ec2d8d96bad9d6ce52494f22ae11 (diff)
downloadguix-ccc6ebc63f34343e318ae7558dfad12b70538f38.tar.gz
guix-ccc6ebc63f34343e318ae7558dfad12b70538f38.zip
gnu: r-methylumi: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.46.0.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm4
1 files changed, 2 insertions, 2 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 94f30c03a3..8a46cc020e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12262,14 +12262,14 @@ methylation arrays.")
(define-public r-methylumi
(package
(name "r-methylumi")
- (version "2.44.0")
+ (version "2.46.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "methylumi" version))
(sha256
(base32
- "07kfyv3kkayzh0akxfl3p9gckw8qiplkxbyxw8npc7cb03ihgmc4"))))
+ "1aa0pwjyp2p9a4mx4n4qw88ndgrj56p669yzdkd7hxhc3x55nzlf"))))
(build-system r-build-system)
(propagated-inputs
(list r-annotate
t-field]: Use 'assoc-ref' instead of 'hash-ref'. (json->branches): Use 'map' instead of 'hash-map->list'. (json->checksums): Likewise. (json->directory-entries, origin-visits): Call 'vector->list' on the result of 'json->scm'. * tests/import-utils.scm ("alist->package with dependencies"): New test. * gnu/installer.scm (build-compiled-file)[builder]: Use GUILE-JSON-3. * gnu/installer.scm (installer-program)[installer-builder]: Likewise. * gnu/installer/locale.scm (iso639->iso639-languages): Use 'assoc-ref' instead of 'hash-ref', and pass vectors through 'vector->list'. (iso3166->iso3166-territories): Likewise. * gnu/system/vm.scm (system-docker-image)[build]: Use GUILE-JSON-3. * guix/docker.scm (manifest, config): Adjust for Guile-JSON 3. * guix/scripts/pack.scm (docker-image)[build]: Use GUILE-JSON-3. * guix/import/github.scm (fetch-releases-or-tags): Update docstring. (latest-released-version): Use 'assoc-ref' instead of 'hash-ref'. Pass the result of 'fetch-releases-or-tags' to 'vector->list'. * guix/import/launchpad.scm (latest-released-version): Likewise. Ludovic Courtès 2019-05-06Add (guix lzlib)....* guix/lzlib.scm, tests/lzlib.scm: New files. * Makefile.am (MODULES): Add guix/lzlib.scm. (SCM_TESTS): Add tests/lzlib.scm. * m4/guix.m4 (GUIX_LIBLZ_LIBDIR): New macro. * configure.ac (LIBLZ_LIBDIR): Use it. Define and substitute 'LIBLZ'. * guix/config.scm.in (%liblz): New variable. * guix/self.scm (make-config.scm): Add TODO comment. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Pierre Neidhardt 2019-04-17build: No longer substitute 'LIBGCRYPT'....This had become useless since ca719424455465fca4b872c371daf2a46de88b33. * configure.ac (LIBGCRYPT): Remove. * guix/config.scm.in (%libgcrypt): Remove. Ludovic Courtès 2019-01-17configure: Disable installer build by default....Only build installer if "--enable-installer" is passed. In that case only, the support for Guile-newt becomes mandatory. * configure.ac: Add --enable-installer argument. Export ENABLE_INSTALLER conditional according to the argument value. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove installer modules and build them only if ENABLE_INSTALLER is set. Mathieu Othacehe 2019-01-17gnu: Add graphical installer support....* configure.ac: Require that guile-newt is available. * gnu/installer.scm: New file. * gnu/installer/aux-files/logo.txt: New file. * gnu/installer/build-installer.scm: New file. * gnu/installer/connman.scm: New file. * gnu/installer/keymap.scm: New file. * gnu/installer/locale.scm: New file. * gnu/installer/newt.scm: New file. * gnu/installer/newt/ethernet.scm: New file. * gnu/installer/newt/hostname.scm: New file. * gnu/installer/newt/keymap.scm: New file. * gnu/installer/newt/locale.scm: New file. * gnu/installer/newt/menu.scm: New file. * gnu/installer/newt/network.scm: New file. * gnu/installer/newt/page.scm: New file. * gnu/installer/newt/timezone.scm: New file. * gnu/installer/newt/user.scm: New file. * gnu/installer/newt/utils.scm: New file. * gnu/installer/newt/welcome.scm: New file. * gnu/installer/newt/wifi.scm: New file. * gnu/installer/steps.scm: New file. * gnu/installer/timezone.scm: New file. * gnu/installer/utils.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add previous files. * gnu/system.scm: Export %root-account. * gnu/system/install.scm (%installation-services): Use kmscon instead of linux VT for all tty. (installation-os)[users]: Add the graphical installer as shell of the root account. [packages]: Add font related packages. * po/guix/POTFILES.in: Add installer files. Mathieu Othacehe 2019-01-09build: Require Guile 2.2....* configure.ac: Require Guile 2.2. * README: Adjust accordingly. * doc/guix.texi (Requirements): Likewise. * gnu/packages/package-management.scm (guile2.0-guix): Deprecate. (guix-minimal): Inherit from GUIX, not from GUILE2.0-GUIX. Ludovic Courtès 2018-12-02Make Guile-JSON a required dependency....* README (Requirements): Remove "optional" verbiage. * doc/guix.texi (Requirements): Move Guile-JSON from optional to required. * configure.ac (HAVE_GUILE_JSON): Remove Automake conditional. (have_guile_json): Error if not "yes". * Makefile.am (MODULE, SCM_TESTS)[HAVE_GUILE_JSON]: Add modules and tests unconditionally. * gnu/packages/package-mangement.scm (guix-minimal)[propagated-inputs]: Leave guile-json input. Eric Bavier 2018-10-12build: Fine-tune the forbidden M4 patterns....* configure.ac: Forbid "^GUILE_P", allow "^GUILE_PKG_ERRORS". Ludovic Courtès 2018-10-12build: Remove obsolete reference to 'GUIX_ASSERT_LIBGCRYPT_USABLE'....Reported by Mark H Weaver <mhw@netris.org>. Fixes <https://bugs.gnu.org/33023>. * configure.ac: Remove use of 'GUIX_ASSERT_LIBGCRYPT_USABLE'. Add "^GUIX_" to the forbidden M4 patterns. Ludovic Courtès 2018-09-04Switch to Guile-Gcrypt....This removes (guix hash) and (guix pk-crypto), which now live as part of Guile-Gcrypt (version 0.1.0.) * guix/gcrypt.scm, guix/hash.scm, guix/pk-crypto.scm, tests/hash.scm, tests/pk-crypto.scm: Remove. * configure.ac: Test for Guile-Gcrypt. Remove LIBGCRYPT and LIBGCRYPT_LIBDIR assignments. * m4/guix.m4 (GUIX_ASSERT_LIBGCRYPT_USABLE): Remove. * README: Add Guile-Gcrypt to the dependencies; move libgcrypt as "required unless --disable-daemon". * doc/guix.texi (Requirements): Likewise. * gnu/packages/bash.scm, guix/derivations.scm, guix/docker.scm, guix/git.scm, guix/http-client.scm, guix/import/cpan.scm, guix/import/cran.scm, guix/import/crate.scm, guix/import/elpa.scm, guix/import/gnu.scm, guix/import/hackage.scm, guix/import/texlive.scm, guix/import/utils.scm, guix/nar.scm, guix/pki.scm, guix/scripts/archive.scm, guix/scripts/authenticate.scm, guix/scripts/download.scm, guix/scripts/hash.scm, guix/scripts/pack.scm, guix/scripts/publish.scm, guix/scripts/refresh.scm, guix/scripts/substitute.scm, guix/store.scm, guix/store/deduplication.scm, guix/tests.scm, tests/base32.scm, tests/builders.scm, tests/challenge.scm, tests/cpan.scm, tests/crate.scm, tests/derivations.scm, tests/gem.scm, tests/nar.scm, tests/opam.scm, tests/pki.scm, tests/publish.scm, tests/pypi.scm, tests/store-deduplication.scm, tests/store.scm, tests/substitute.scm: Adjust imports. * gnu/system/vm.scm: Likewise. (guile-sqlite3&co): Rename to... (gcrypt-sqlite3&co): ... this. Add GUILE-GCRYPT. (expression->derivation-in-linux-vm)[config]: Remove. (iso9660-image)[config]: Remove. (qemu-image)[config]: Remove. (system-docker-image)[config]: Remove. * guix/scripts/pack.scm: Adjust imports. (guile-sqlite3&co): Rename to... (gcrypt-sqlite3&co): ... this. Add GUILE-GCRYPT. (self-contained-tarball)[build]: Call 'make-config.scm' without #:libgcrypt argument. (squashfs-image)[libgcrypt]: Remove. [build]: Call 'make-config.scm' without #:libgcrypt. (docker-image)[config, json]: Remove. [build]: Add GUILE-GCRYPT to the extensions Remove (guix config) from the imported modules. * guix/self.scm (specification->package): Remove "libgcrypt", add "guile-gcrypt". (compiled-guix): Remove #:libgcrypt. [guile-gcrypt]: New variable. [dependencies]: Add it. [*core-modules*]: Remove #:libgcrypt from 'make-config.scm' call. Add #:extensions. [*config*]: Remove #:libgcrypt from 'make-config.scm' call. (%dependency-variables): Remove %libgcrypt. (make-config.scm): Remove #:libgcrypt. * build-aux/build-self.scm (guile-gcrypt): New variable. (make-config.scm): Remove #:libgcrypt. (build-program)[fake-gcrypt-hash]: New variable. Add (gcrypt hash) to the imported modules. Adjust load path assignments. * gnu/packages/package-management.scm (guix)[propagated-inputs]: Add GUILE-GCRYPT. [arguments]: In 'wrap-program' phase, add GUILE-GCRYPT to the search path. Ludovic Courtès