aboutsummaryrefslogtreecommitdiff
path: root/gnu
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2019-05-06 00:08:38 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-05-06 00:14:58 +0200
commitc881b9ef3a50b6245434bbb9c97847959470a272 (patch)
tree60a550b4e00ebed4488f62b041891d4b13ec2e7a /gnu
parenta6edf33533eb673b680e7e59ec53bf7ff212aeef (diff)
downloadguix-c881b9ef3a50b6245434bbb9c97847959470a272.tar.gz
guix-c881b9ef3a50b6245434bbb9c97847959470a272.zip
gnu: r-widgettools: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.62.0.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm4
1 files changed, 2 insertions, 2 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9cb8542ff7..db4d5f6522 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4163,14 +4163,14 @@ visualization of exonic read coverage.")
(define-public r-widgettools
(package
(name "r-widgettools")
- (version "1.60.0")
+ (version "1.62.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "widgetTools" version))
(sha256
(base32
- "0mz69pdr6q69avsvs6r5ncdkdmgwfislpil4v18dsflw4j454gwf"))))
+ "021b4s5vcy68p95p8rrcz8a8b1gyk4k8zq06snn32k2dqr91xi1a"))))
(properties `((upstream-name . "widgetTools")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/widgetTools/")
'>152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184
;;;; test-driver.scm - Guile test driver for Automake testsuite harness

(define script-version "2017-03-22.13") ;UTC

;;; Copyright © 2015, 2016 Mathieu Lirzin <mthl@gnu.org>
;;;
;;; This program is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; This program is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with this program.  If not, see <http://www.gnu.org/licenses/>.

;;;; Commentary:
;;;
;;; This script provides a Guile test driver using the SRFI-64 Scheme API for
;;; test suites.  SRFI-64 is distributed with Guile since version 2.0.9.
;;;
;;;; Code:

(use-modules (ice-9 getopt-long)
             (ice-9 pretty-print)
             (srfi srfi-26)
             (srfi srfi-64))

(define (show-help)
  (display "Usage:
   test-driver --test-name=NAME --log-file=PATH --trs-file=PATH
               [--expect-failure={yes|no}] [--color-tests={yes|no}]
               [--enable-hard-errors={yes|no}] [--brief={yes|no}}] [--]
               TEST-SCRIPT [TEST-SCRIPT-ARGUMENTS]
The '--test-name', '--log-file' and '--trs-file' options are mandatory.\n"))

(define %options
  '((test-name                 (value #t))
    (log-file                  (value #t))
    (trs-file                  (value #t))
    (color-tests               (value #t))
    (expect-failure            (value #t)) ;XXX: not implemented yet
    (enable-hard-errors        (value #t)) ;not implemented in SRFI-64
    (brief                     (value #t))
    (help    (single-char #\h) (value #f))
    (version (single-char #\V) (value #f))))

(define (option->boolean options key)
  "Return #t if the value associated with KEY in OPTIONS is \"yes\"."
  (and=> (option-ref options key #f) (cut string=? <> "yes")))

(define* (test-display field value  #:optional (port (current-output-port))
                       #:key pretty?)
  "Display \"FIELD: VALUE\\n\" on PORT."
  (if pretty?
      (begin
        (format port "~A:~%" field)
        (pretty-print value port #:per-line-prefix "+ "))
      (format port "~A: ~S~%" field value)))

(define* (result->string symbol #:key colorize?)
  "Return SYMBOL as an upper case string.  Use colors when COLORIZE is #t."
  (let ((result (string-upcase (symbol->string symbol))))
    (if colorize?
        (string-append (case symbol
                         ((pass)       "")  ;green
                         ((xfail)      "")  ;light green
                         ((skip)       "")  ;blue
                         ((fail xpass) "")  ;red
                         ((error)      "")) ;magenta
                       result
                       "")          ;no color
        result)))

(define* (test-runner-gnu test-name #:key color? brief? out-port trs-port)
  "Return an custom SRFI-64 test runner.  TEST-NAME is a string specifying the
file name of the current the test.  COLOR? specifies whether to use colors,
and BRIEF?, well, you know.  OUT-PORT and TRS-PORT must be output ports.  The
current output port is supposed to be redirected to a '.log' file."

  (define (test-on-test-begin-gnu runner)
    ;; Procedure called at the start of an individual test case, before the
    ;; test expression (and expected value) are evaluated.
    (let ((result (cute assq-ref (test-result-alist runner) <>)))
      (format #t "test-name: ~A~%" (result 'test-name))
      (format #t "location: ~A~%"
              (string-append (result 'source-file) ":"
                             (number->string (result 'source-line))))
      (test-display "source" (result 'source-form) #:pretty? #t)))

  (define (test-on-test-end-gnu runner)
    ;; Procedure called at the end of an individual test case, when the result
    ;; of the test is available.
    (let* ((results (test-result-alist runner))
           (result? (cut assq <> results))
           (result  (cut assq-ref results <>)))
      (unless brief?
        ;; Display the result of each test case on the console.
        (format out-port "~A: ~A - ~A~%"
                (result->string (test-result-kind runner) #:colorize? color?)
                test-name (test-runner-test-name runner)))
      (when (result? 'expected-value)
        (test-display "expected-value" (result 'expected-value)))
      (when (result? 'expected-error)
        (test-display "expected-error" (result 'expected-error) #:pretty? #t))
      (when (result? 'actual-value)
        (test-display "actual-value" (result 'actual-value)))
      (when (result? 'actual-error)
        (test-display "actual-error" (result 'actual-error) #:pretty? #t))
      (format #t "result: ~a~%" (result->string (result 'result-kind)))
      (newline)
      (format trs-port ":test-result: ~A ~A~%"
              (result->string (test-result-kind runner))
              (test-runner-test-name runner))))

  (define (test-on-group-end-gnu runner)
    ;; Procedure called by a 'test-end', including at the end of a test-group.
    (let ((fail (or (positive? (test-runner-fail-count runner))
                    (positive? (test-runner-xpass-count runner))))
          (skip (or (positive? (test-runner-skip-count runner))
                    (positive? (test-runner-xfail-count runner)))))
      ;; XXX: The global results need some refinements for XPASS.
      (format trs-port ":global-test-result: ~A~%"
              (if fail "FAIL" (if skip "SKIP" "PASS")))
      (format trs-port ":recheck: ~A~%"
              (if fail "yes" "no"))
      (format trs-port ":copy-in-global-log: ~A~%"
              (if (or fail skip) "yes" "no"))
      (when brief?
        ;; Display the global test group result on the console.
        (format out-port "~A: ~A~%"
                (result->string (if fail 'fail (if skip 'skip 'pass))
                                #:colorize? color?)
                test-name))
      #f))

  (let ((runner (test-runner-null)))
    (test-runner-on-test-begin! runner test-on-test-begin-gnu)
    (test-runner-on-test-end! runner test-on-test-end-gnu)
    (test-runner-on-group-end! runner test-on-group-end-gnu)
    (test-runner-on-bad-end-name! runner test-on-bad-end-name-simple)
    runner))


;;;
;;; Entry point.
;;;

(define (main . args)
  (let* ((opts   (getopt-long (command-line) %options))
         (option (cut option-ref opts <> <>)))
    (cond
     ((option 'help #f)    (show-help))
     ((option 'version #f) (format #t "test-driver.scm ~A" script-version))
     (else
      (let ((log (open-file (option 'log-file "") "w0"))
            (trs (open-file (option 'trs-file "") "wl"))
            (out (duplicate-port (current-output-port) "wl")))
        (redirect-port log (current-output-port))
        (redirect-port log (current-warning-port))
        (redirect-port log (current-error-port))
        (test-with-runner
            (test-runner-gnu (option 'test-name #f)
                             #:color? (option->boolean opts 'color-tests)
                             #:brief? (option->boolean opts 'brief)
                             #:out-port out #:trs-port trs)
          (load-from-path (option 'test-name #f)))
        (close-port log)
        (close-port trs)
        (close-port out))))
    (exit 0)))

;;; Local Variables:
;;; eval: (add-hook 'write-file-functions 'time-stamp)
;;; time-stamp-start: "(define script-version \""
;;; time-stamp-format: "%:y-%02m-%02d.%02H"
;;; time-stamp-time-zone: "UTC"
;;; time-stamp-end: "\") ;UTC"
;;; End:

;;;; test-driver.scm ends here.