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| author | Marius Bakke <mbakke@fastmail.com> | 2020-02-12 21:16:09 +0100 |
|---|---|---|
| committer | Marius Bakke <mbakke@fastmail.com> | 2020-02-13 16:47:22 +0100 |
| commit | bf71edd3df1aed8037678631c296c03b437d8a8a (patch) | |
| tree | e4e11dbb93def6c0ca114eaa752e50d27e3a5744 /gnu | |
| parent | 2537ce68b02e50ed374ec2828aecfd7e14b6a62f (diff) | |
| download | guix-bf71edd3df1aed8037678631c296c03b437d8a8a.tar.gz guix-bf71edd3df1aed8037678631c296c03b437d8a8a.zip | |
gnu: python2-pbcore: Remove python2-sphinx dependency.
* gnu/packages/bioinformatics.scm (python2-pbcore)[arguments]: Add #:phases.
[native-inputs]: Remove PYTHON2-SPHINX.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 12 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b7b80cec02..065555b37b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> -;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com> +;;; Copyright © 2016, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com> ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> @@ -4733,7 +4733,17 @@ interrupted by stop codons. OrfM finds and prints these ORFs.") (base32 "1kjmv891d6qbpp4shhhvkl02ff4q5xlpnls2513sm2cjcrs52f1i")))) (build-system python-build-system) - (arguments `(#:python ,python-2)) ; pbcore requires Python 2.7 + (arguments + `(#:python ,python-2 ;pbcore < 2.0 requires Python 2.7 + #:phases (modify-phases %standard-phases + (add-after 'unpack 'remove-sphinx-dependency + (lambda _ + ;; Sphinx is only required for documentation tests, which + ;; we do not run; furthermore it depends on python2-sphinx + ;; which is no longer maintained. + (substitute* "requirements-dev.txt" + (("^sphinx") "")) + #t))))) (propagated-inputs `(("python-cython" ,python2-cython) ("python-numpy" ,python2-numpy) @@ -4741,7 +4751,6 @@ interrupted by stop codons. OrfM finds and prints these ORFs.") ("python-h5py" ,python2-h5py))) (native-inputs `(("python-nose" ,python2-nose) - ("python-sphinx" ,python2-sphinx) ("python-pyxb" ,python2-pyxb))) (home-page "https://pacificbiosciences.github.io/pbcore/") (synopsis "Library for reading and writing PacBio data files") |