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authorRicardo Wurmus <rekado@elephly.net>2019-03-27 15:45:00 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-27 16:17:19 +0100
commitb5b0a2ff493ba1a6a401522b7a34c73fa7c05134 (patch)
tree5dc80fd4509cf0b5448be428866a52c49fb16baf /gnu
parent83f43284c31f0cb83afb6210c3e07cc4954c1545 (diff)
downloadguix-b5b0a2ff493ba1a6a401522b7a34c73fa7c05134.tar.gz
guix-b5b0a2ff493ba1a6a401522b7a34c73fa7c05134.zip
gnu: Add r-europepmc.
* gnu/packages/cran.scm (r-europepmc): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/cran.scm35
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 43b738c377..92f9513de4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13303,3 +13303,38 @@ This focus has led to a lack of facilities for composing specialized plots.
Thi package aims to be a collection of mainly new statistics and geometries
that fills this gap.")
(license license:expat)))
+
+(define-public r-europepmc
+ (package
+ (name "r-europepmc")
+ (version "0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "europepmc" version))
+ (sha256
+ (base32
+ "1ngqs1sqzkbwv98dd5z4cxj8bnz41wyd0g060a2vpqi3s99s4i2h"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-dplyr" ,r-dplyr)
+ ("r-httr" ,r-httr)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-plyr" ,r-plyr)
+ ("r-progress" ,r-progress)
+ ("r-purrr" ,r-purrr)
+ ("r-urltools" ,r-urltools)
+ ("r-xml2" ,r-xml2)))
+ (home-page "https://github.com/ropensci/europepmc/")
+ (synopsis "R Interface to the Europe PubMed Central RESTful Web Service")
+ (description
+ "This package provides an R Client for the
+@url{https://europepmc.org/RestfulWebService,Europe PubMed Central RESTful Web
+Service}. It gives access to both metadata on life science literature and
+open access full texts. Europe PMC indexes all PubMed content and other
+literature sources including Agricola, a bibliographic database of citations
+to the agricultural literature, or Biological Patents. In addition to
+bibliographic metadata, the client allows users to fetch citations and
+reference lists. Links between life-science literature and other EBI
+databases, including ENA, PDB or ChEMBL are also accessible.")
+ (license license:gpl3)))