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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-13 18:51:11 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-13 22:41:39 +0100 |
| commit | b441dac7af3f6fbf8b0a7def117abc0181b52f33 (patch) | |
| tree | 55f12a7e537689c696f210f8aea5a18fa790947a /gnu | |
| parent | b8d52fe2771220742bf7e55700d0a91e05d8536c (diff) | |
| download | guix-b441dac7af3f6fbf8b0a7def117abc0181b52f33.tar.gz guix-b441dac7af3f6fbf8b0a7def117abc0181b52f33.zip | |
gnu: Add r-ace2fastq.
* gnu/packages/cran.scm (r-ace2fastq): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/cran.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5c530a6a36..4b4d1996b7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16860,3 +16860,29 @@ Functions for performing cross validation are also supplied along with basic prediction and plotting functions. @dfn{Sparse zero variance discriminant} (SZVD) analysis is also included in the package.") (license license:gpl2+))) + +(define-public r-ace2fastq + (package + (name "r-ace2fastq") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ace2fastq" version)) + (sha256 + (base32 + "09kk3yyqnr2xp820g0p3aai9a21figigjr9lxkr3zjq2d8gzwfic")))) + (properties `((upstream-name . "ace2fastq"))) + (build-system r-build-system) + (propagated-inputs + `(("r-stringr" ,r-stringr))) + (home-page "https://github.com/c5sire/ace2fastq") + (synopsis "ACE file to FASTQ converter") + (description + "The ACE file format is used in genomics to store contigs from sequencing +machines. This tools converts it into FASTQ format. Both formats contain the +sequence characters and their corresponding quality information. Unlike the +FASTQ file, the ACE file stores the quality values numerically. The +conversion algorithm uses the standard Sanger formula. The package +facilitates insertion into pipelines, and content inspection.") + (license license:gpl3))) |