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authorRicardo Wurmus <rekado@elephly.net>2018-09-09 15:36:10 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-09-09 22:26:02 +0200
commitab50580a9d9379b62b9d3e9db5f3402b8462dd98 (patch)
treeadc2a5a133279a1e10a6a68b1adffc30bd881f41 /gnu
parent35c076e619c0a7c25456fceb2e694f76e0315db5 (diff)
downloadguix-ab50580a9d9379b62b9d3e9db5f3402b8462dd98.tar.gz
guix-ab50580a9d9379b62b9d3e9db5f3402b8462dd98.zip
gnu: r-annotationhub: Update to 2.12.1.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.1.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm4
1 files changed, 2 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2d5ec6d170..6580cac531 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9866,14 +9866,14 @@ Shiny-based display methods for Bioconductor objects.")
(define-public r-annotationhub
(package
(name "r-annotationhub")
- (version "2.12.0")
+ (version "2.12.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "AnnotationHub" version))
(sha256
(base32
- "11gh7qkgazs90czdqgv74gh2hz26xrmdp6wsz9x5pygbxls8xdw3"))))
+ "02ls279k1qlch147vw8kwvlhcqyzvi495bgv110m0xnnbpgbln6g"))))
(properties `((upstream-name . "AnnotationHub")))
(build-system r-build-system)
(propagated-inputs
(zabbix-agent-configuration): Likewise. * gnu/services/networking.scm (opendht-configuration): Likewise. * gnu/services/pm.scm (tlp-configuration): Likewise. * gnu/services/telephony.scm (jami-configuration): Likewise. * gnu/services/virtualization.scm (libvirt-configuration) (qemu-guest-agent-configuration): Likewise. * gnu/services/vpn.scm (openvpn-client-configuration): Likewise. Tobias Geerinckx-Rice 2021-11-17services: docker: Add 'environment-variables' configuration field....* gnu/services/docker.scm (docker-configuration): Add the field (docker-shepherd-service): Pass the list of defined variables to make-forkexec-constructor. * doc/guix.texi (Miscellaneous Services): Update doc. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alexey Abramov 2021-07-29services: Migrate to <setuid-program>....* gnu/services/dbus.scm (dbus-setuid-programs, polkit-setuid-programs): Return setuid-programs. * gnu/services/desktop.scm (enlightenment-setuid-programs): Return setuid-programs. (%desktop-services)[mount-setuid-helpers]: Use setuid-programs. * gnu/services/docker.scm (singularity-setuid-programs): Return setuid-programs. * gnu/services/xorg.scm(screen-locker-setuid-programs): Return setuid-programs. * gnu/system.scm (%setuid-programs): Return setuid-programs. * doc/guix.texi (Setuid Programs, operating-system Reference): Replace 'list of G-expressions' with 'list of <setuid-program>'. Brice Waegeneire 2021-05-08services: docker: Disable configuration serialization....* gnu/services/docker.scm (serialize-boolean): Delete procedure. (docker-configuration) <no-serialization>: New syntactic keyword. Maxim Cournoyer 2020-10-17services: docker: Fix missing containerd-shim binary....This commit fixes error 'time="2020-10-16T…" level=error msg="Handler for POST /v1.40/containers/…/start returned error: failed to start shim: exec: \"containerd-shim\": executable file not found in $PATH: unknown"'. * gnu/services/docker.scm (containerd-shepherd-service): Add "containerd-shim" to PATH. Oleg Pykhalov 2020-09-23services: docker: Fix configuration....This is a follow-up to e04b90607ac903359c90c9bad1b67fb7ce2f0eb6. * gnu/services/docker.scm (docker-shepherd-service): Fix "enable-proxy?" configuration. Oleg Pykhalov 2020-09-21services: Docker: Fix typo in configuration....This is a follow-up to f0a09310e6ff2ed63770cb585c551ba94ce4a9d0. * gnu/services/docker.scm (docker-shepherd-service): Properly reference variables in service definition. Efraim Flashner 2020-09-21services: docker: Fix enable-proxy? option....The userland proxy option does not properly disable the userland proxy when set to false. Docker defaults to enabling the userland proxy if the option is unset on the command line. * gnu/services/docker.scm (docker-shepherd-service): Properly handle the 'enable-proxy?' option. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jesse Dowell 2020-09-15services: docker: Fix service definition....This commit follows a404716d411cf7cd49ff02e3100f0bbf6622d6d5. * gnu/services/docker.scm (docker-configuration)[docker-cli]: New record field. (docker-service-type): Use this. * doc/guix.texi (Miscellaneous Services)[Docker Service]: Document this. Oleg Pykhalov 2020-09-14services: docker: Fix service definition....This is a follow-up to 8422a67dc16af4dd5eb82180463aa7a0b362d5b9. * gnu/services/docker.scm (docker-service-type): Use a composed list for packages in profile-service-type. Efraim Flashner 2020-09-14services: docker: Make docker command available....* gnu/services/docker.scm (docker-service-type): Extend the profile-service-type and add the docker-cli package. Efraim Flashner 2020-08-16services: docker: Add 'enable-iptables?' argument....* gnu/services/docker.scm (docker-configuration): Define the argument. * gnu/services/docker.scm (docker-shepherd-service): Use it. * doc/guix.texi (Docker Service): Document it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Alexey Abramov 2020-06-03gnu: services: docker: Add a debug? parameter....* gnu/services/docker.scm (docker-configuration): Add a debug? field. (containerd-shepherd-service): Pass the "--log-level=debug" argument when DEBUG? is true. (docker-shepherd-service): Pass the "--debug" and "--log-level=debug" arguments when DEBUG? is true. * doc/guix.texi (Miscellaneous Services): Update doc. Maxim Cournoyer 2020-04-27file-systems: mount the PID cgroup filesystem....* gnu/system/file-systems.scm (%control-groups): Add "pids". * gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO. This has allowed me to make a specific configuration of nsjail work. Jakub Kądziołka